nrncore_io.h

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#ifndef NRN_NRNCORE_IO_H
#define NRN_NRNCORE_IO_H

#include <string>
#include <vector>

class CellGroup;
class NrnThread;
union Datum;
class NrnMappingInfo;

void create_dir_path(const std::string& path);
std::string get_write_path();
std::string get_filename(const std::string &path, std::string file_name);

// returns start pointer of the container's data
template<typename T>
inline T *begin_ptr(std::vector <T> &v) {
    return v.empty() ? NULL : &v[0];
}



// to avoid incompatible dataset between neuron and coreneuron
// add version string to the dataset files
extern const char *bbcore_write_version;
extern int chkpnt;

void write_memb_mech_types(const char *fname);
void write_globals(const char *fname);
void write_nrnthread(const char *fname, NrnThread &nt, CellGroup &cg);
void writeint_(int *p, size_t size, FILE *f);
void writedbl_(double *p, size_t size, FILE *f);

#define writeint(p, size) writeint_(p, size, f)
#define writedbl(p, size) writedbl_(p, size, f)
typedef void (*bbcore_write_t)(double *, int *, int *, int *, double *, Datum *, Datum *, NrnThread *);

void write_contiguous_art_data(double **data, int nitem, int szitem, FILE *f);
double *contiguous_art_data(double **data, int nitem, int szitem);
void write_nrnthread_task(const char *, CellGroup *cgs, bool append);
void nrnbbcore_vecplay_write(FILE *f, NrnThread &nt);

void nrn_write_mapping_info(const char *path, int gid, NrnMappingInfo &minfo);


#endif //NRN_NRNCORE_IO_H