#include <../../nrnconf.h>
#include <nrnmpiuse.h>
#include <stdio.h>
#include <errno.h>
#include <string.h>
#include <stdlib.h>
#include <unistd.h>
#include "section.h"
#include "parse.hpp"
#include "nrniv_mf.h"
#include "cabvars.h"
#include "neuron.h"
#include "membdef.h"
#include "nrnmpi.h"

Macros
#define	CHECK(name)

Typedefs
using	bbcore_write_t = void()(double , int , int , int , double , Datum , Datum , NrnThread *)

Functions
int	nrn_load_dll_recover_error ()

void	nrn_load_name_check (const char *name)

void	hoc_reg_watch_allocate (int type, NrnWatchAllocateFunc_t waf)

void	hoc_reg_bbcore_write (int type, bbcore_write_t f)

void	hoc_reg_bbcore_read (int type, bbcore_write_t f)

void	hoc_reg_nmodl_text (int type, const char *txt)

void	hoc_reg_nmodl_filename (int type, const char *filename)

void	add_nrn_has_net_event (int type)

void	add_nrn_fornetcons (int type, int indx)

void	add_nrn_artcell (int type, int qi)

int	nrn_is_artificial (int pnttype)

int	nrn_is_cable (void)

void *	nrn_realpath_dlopen (const char *relpath, int flags)

int	mswin_load_dll (const char *cp1)

void	hoc_nrn_load_dll (void)

void	nrn_threads_create (int, int)

void	hoc_last_init (void)

void	initnrn (void)

void	nrn_register_mech_common (const char **m, Pvmp alloc, Pvmi cur, Pvmi jacob, Pvmi stat, Pvmi initialize, int nrnpointerindex, int vectorized)

void	register_mech (const char **m, Pvmp alloc, Pvmi cur, Pvmi jacob, Pvmi stat, Pvmi initialize, int nrnpointerindex, int vectorized)

void	nrn_writes_conc (int type, int unused)

void	hoc_register_prop_size (int type, int psize, int dpsize)

void	hoc_register_dparam_semantics (int type, int ix, const char *name)

void	hoc_register_cvode (int i, nrn_ode_count_t cnt, nrn_ode_map_t map, Pvmi spec, Pvmi matsol)

void	hoc_register_synonym (int i, void(syn)(int, double , Datum *))

void	register_destructor (Pvmp d)

int	point_reg_helper (Symbol *s2)

void	class2oc (const char , void (cons)(Object ), void(destruct)(void ), Member_func , int(checkpoint)(void *), Member_ret_obj_func , Member_ret_str_func *)

int	point_register_mech (const char *m, Pvmp alloc, Pvmi cur, Pvmi jacob, Pvmi stat, Pvmi initialize, int nrnpointerindex, int vectorized, void (constructor)(Object ), void(destructor)(void ), Member_func *fmember)

void	_modl_cleanup (void)

void	_modl_set_dt (double newdt)

void	_modl_set_dt_thread (double newdt, NrnThread *nt)

double	_modl_get_dt_thread (NrnThread *nt)

int	nrn_pointing (double *pd)

void	state_discontinuity (int i, double *pd, double d)

void	hoc_register_limits (int type, HocParmLimits *limits)

void	hoc_register_units (int type, HocParmUnits *units)

void	hoc_reg_ba (int mt, nrn_bamech_t f, int type)

void	_cvode_abstol (Symbol *s, double tol, int i)

Node **	node_construct (int)

void	hoc_register_tolerance (int type, HocStateTolerance tol, Symbol **stol)

void	_nrn_thread_reg (int i, int cons, void(f)(Datum ))

void	_nrn_thread_table_reg (int i, void(f)(double , Datum , Datum , NrnThread *, int))

void	_nrn_setdata_reg (int i, void(call)(Prop ))

double	nrn_call_mech_func (Symbol s, int narg, Prop p, int type)

void	nrnunit_use_legacy ()

Variables
static char	nmodl_version_ []

static char	banner []

static char	CHKmes [] = "The user defined name, %s, already exists\n"

void(*	nrnpy_reg_mech_p_ )(int)

int	secondorder =0

int	state_discon_allowed_

int	nrn_nobanner_

double	t

double	dt

double	clamp_resist

double	celsius

double	htablemin

double	htablemax

int	nrn_netrec_state_adjust = 0

int	nrn_sparse_partrans = 0

hoc_List *	section_list

int	nrn_global_ncell = 0

double	hoc_default_dll_loaded_

int	nrn_istty_

static HocParmLimits	_hoc_parm_limits []

static HocParmUnits	_hoc_parm_units []

Symlist *	nrn_load_dll_called_

static int	memb_func_size_

Memb_func *	memb_func

Memb_list *	memb_list

short *	memb_order_

Symbol **	pointsym

Point_process **	point_process

char *	pnt_map

BAMech **	bamech_

cTemplate **	nrn_pnt_template_

pnt_receive_t *	pnt_receive

pnt_receive_init_t *	pnt_receive_init

short *	pnt_receive_size

int	nrn_has_net_event_cnt_

int *	nrn_has_net_event_

int *	nrn_prop_param_size_

int *	nrn_prop_dparam_size_

int *	nrn_dparam_ptr_start_

int *	nrn_dparam_ptr_end_

NrnWatchAllocateFunc_t *	nrn_watch_allocate_

bbcore_write_t *	nrn_bbcore_write_

bbcore_write_t *	nrn_bbcore_read_

const char **	nrn_nmodl_text_

const char **	nrn_nmodl_filename_

int	nrn_fornetcon_cnt_

int *	nrn_fornetcon_type_

int *	nrn_fornetcon_index_

short *	nrn_is_artificial_

short *	nrn_artcell_qindex_

static DoubScal	scdoub []

static int	pointtype = 1

int	n_memb_func

int	_ninits

int	state_discon_flag_ = 0

Macro Definition Documentation

◆ CHECK

#define CHECK ( name )

Value:

if (hoc_lookup(name) != (Symbol *)0){\
        IGNORE(fprintf(stderr, CHKmes, name));\
        nrn_exit(1);}

Definition at line 112 of file init.cpp.

Typedef Documentation

◆ bbcore_write_t

using bbcore_write_t = void (*)(double*, int*, int*, int*, double*, Datum*, Datum*, NrnThread*)

Definition at line 189 of file init.cpp.

Function Documentation

◆ _cvode_abstol()

void _cvode_abstol	(	Symbol **	s,
		double *	tol,
		int	i
	)

Definition at line 954 of file init.cpp.

◆ _modl_cleanup()

void _modl_cleanup ( void )

Definition at line 865 of file init.cpp.

◆ _modl_get_dt_thread()

double _modl_get_dt_thread ( NrnThread * nt )

Definition at line 875 of file init.cpp.

◆ _modl_set_dt()

void _modl_set_dt ( double newdt )

Definition at line 868 of file init.cpp.

◆ _modl_set_dt_thread()

void _modl_set_dt_thread	(	double	newdt,
		NrnThread *	nt
	)

Definition at line 872 of file init.cpp.

◆ _nrn_setdata_reg()

void _nrn_setdata_reg	(	int	i,
		void()(Prop )	call
	)

Definition at line 1056 of file init.cpp.

◆ _nrn_thread_reg()

void _nrn_thread_reg	(	int	i,
		int	cons,
		void()(Datum )	f
	)

Definition at line 1042 of file init.cpp.

◆ _nrn_thread_table_reg()

void _nrn_thread_table_reg	(	int	i,
		void()(double , Datum , Datum , NrnThread *, int)	f
	)

Definition at line 1052 of file init.cpp.

◆ add_nrn_artcell()

void add_nrn_artcell	(	int	type,
		int	qi
	)

Definition at line 234 of file init.cpp.

◆ add_nrn_fornetcons()

void add_nrn_fornetcons	(	int	type,
		int	indx
	)

Definition at line 222 of file init.cpp.

◆ add_nrn_has_net_event()

void add_nrn_has_net_event ( int type )

Definition at line 211 of file init.cpp.

◆ class2oc()

void class2oc	(	const char *	,
		void ()(Object *)	cons,
		void()(void )	destruct,
		Member_func *	,
		int()(void *)	checkpoint,
		Member_ret_obj_func *	,
		Member_ret_str_func *
	)

Definition at line 1581 of file hoc_oop.cpp.

◆ hoc_nrn_load_dll()

void hoc_nrn_load_dll ( void )

Definition at line 307 of file init.cpp.

◆ hoc_reg_ba()

void hoc_reg_ba	(	int	mt,
		nrn_bamech_t	f,
		int	type
	)

Definition at line 934 of file init.cpp.

◆ hoc_reg_bbcore_read()

void hoc_reg_bbcore_read	(	int	type,
		bbcore_write_t	f
	)

Definition at line 197 of file init.cpp.

◆ hoc_reg_bbcore_write()

void hoc_reg_bbcore_write	(	int	type,
		bbcore_write_t	f
	)

Definition at line 193 of file init.cpp.

◆ hoc_reg_nmodl_filename()

void hoc_reg_nmodl_filename	(	int	type,
		const char *	filename
	)

Definition at line 207 of file init.cpp.

◆ hoc_reg_nmodl_text()

void hoc_reg_nmodl_text	(	int	type,
		const char *	txt
	)

Definition at line 202 of file init.cpp.

◆ hoc_reg_watch_allocate()

void hoc_reg_watch_allocate	(	int	type,
		NrnWatchAllocateFunc_t	waf
	)

Definition at line 184 of file init.cpp.

◆ hoc_register_cvode()

void hoc_register_cvode	(	int	i,
		nrn_ode_count_t	cnt,
		nrn_ode_map_t	map,
		Pvmi	spec,
		Pvmi	matsol
	)

Definition at line 779 of file init.cpp.

◆ hoc_register_dparam_semantics()

void hoc_register_dparam_semantics	(	int	type,
		int	ix,
		const char *	name
	)

Definition at line 732 of file init.cpp.

◆ hoc_register_limits()

void hoc_register_limits	(	int	type,
		HocParmLimits *	limits
	)

Definition at line 892 of file init.cpp.

◆ hoc_register_prop_size()

void hoc_register_prop_size	(	int	type,
		int	psize,
		int	dpsize
	)

Definition at line 721 of file init.cpp.

◆ hoc_register_synonym()

void hoc_register_synonym	(	int	i,
		void()(int, double , Datum *)	syn
	)

Definition at line 791 of file init.cpp.

◆ hoc_register_tolerance()

void hoc_register_tolerance	(	int	type,
		HocStateTolerance *	tol,
		Symbol ***	stol
	)

Definition at line 969 of file init.cpp.

◆ hoc_register_units()

void hoc_register_units	(	int	type,
		HocParmUnits *	units
	)

Definition at line 913 of file init.cpp.

◆ initnrn()

void initnrn ( void )

Definition at line 460 of file init.cpp.

◆ mswin_load_dll()

int mswin_load_dll ( const char * cp1 )

Definition at line 281 of file init.cpp.

◆ node_construct()

Node** node_construct ( int )

Definition at line 593 of file solve.cpp.

◆ nrn_call_mech_func()

double nrn_call_mech_func	(	Symbol *	s,
		int	narg,
		Prop *	p,
		int	type
	)

Definition at line 1060 of file init.cpp.

◆ nrn_is_artificial()

int nrn_is_artificial ( int pnttype )

Definition at line 239 of file init.cpp.

◆ nrn_load_dll_recover_error()

int nrn_load_dll_recover_error ( )

Definition at line 22 of file hocusr.cpp.

◆ nrn_load_name_check()

void nrn_load_name_check ( const char * name )

Definition at line 33 of file hocusr.cpp.

◆ nrn_pointing()

int nrn_pointing ( double * pd )

Definition at line 880 of file init.cpp.

◆ nrn_realpath_dlopen()

void* nrn_realpath_dlopen	(	const char *	relpath,
		int	flags
	)

Definition at line 245 of file init.cpp.

◆ nrn_register_mech_common()

void nrn_register_mech_common	(	const char **	m,
		Pvmp	alloc,
		Pvmi	cur,
		Pvmi	jacob,
		Pvmi	stat,
		Pvmi	initialize,
		int	nrnpointerindex,
		int	vectorized
	)

Definition at line 474 of file init.cpp.

◆ nrn_threads_create()

void nrn_threads_create	(	int	,
		int
	)

Definition at line 490 of file multicore.cpp.

◆ nrn_writes_conc()

void nrn_writes_conc	(	int	type,
		int	unused
	)

Definition at line 706 of file init.cpp.

◆ nrnunit_use_legacy()

void nrnunit_use_legacy ( )

Definition at line 1069 of file init.cpp.

◆ point_reg_helper()

int point_reg_helper ( Symbol * s2 )

Definition at line 800 of file init.cpp.

◆ point_register_mech()

int point_register_mech	(	const char **	m,
		Pvmp	alloc,
		Pvmi	cur,
		Pvmi	jacob,
		Pvmi	stat,
		Pvmi	initialize,
		int	nrnpointerindex,
		int	vectorized,
		void ()(Object *)	constructor,
		void()(void )	destructor,
		Member_func *	fmember
	)

Definition at line 821 of file init.cpp.

◆ register_destructor()

void register_destructor ( Pvmp d )

Definition at line 796 of file init.cpp.

◆ register_mech()

void register_mech	(	const char **	m,
		Pvmp	alloc,
		Pvmi	cur,
		Pvmi	jacob,
		Pvmi	stat,
		Pvmi	initialize,
		int	nrnpointerindex,
		int	vectorized
	)

Definition at line 688 of file init.cpp.

◆ state_discontinuity()

void state_discontinuity	(	int	i,
		double *	pd,
		double	d
	)

Definition at line 885 of file init.cpp.

Variable Documentation

◆ _hoc_parm_limits

HocParmLimits _hoc_parm_limits[]

static

Initial value:

= {
    "Ra", 1e-6, 1e9,
    "L", 1e-4, 1e20,
    "diam", 1e-9, 1e9,
    "cm", 0., 1e9,
    "rallbranch", 1., 1e9,
    "nseg", 1., 1e9,
    "celsius", -273., 1e6,
    "dt", 1e-9, 1e15,
    0, 0., 0.
}

Definition at line 132 of file init.cpp.

◆ _hoc_parm_units

HocParmUnits _hoc_parm_units[]

static

Initial value:

= {
    "Ra",       "ohm-cm",
    "L",        "um",
    "diam",     "um",
    "cm",       "uF/cm2",
    "celsius", "degC",
    "dt",       "ms",
    "t",        "ms",
    "v",        "mV",
    "i_cap",    "mA/cm2",
    0, 0
}

Definition at line 144 of file init.cpp.

◆ _ninits

int _ninits

Definition at line 864 of file init.cpp.

◆ bamech_

BAMech** bamech_

Definition at line 167 of file init.cpp.

◆ banner

char banner[]

static

Initial value:

=
        "Duke, Yale, and the BlueBrain Project -- Copyright 1984-2021\n\
See http://neuron.yale.edu/neuron/credits\n"

Definition at line 23 of file init.cpp.

◆ celsius

double celsius

Definition at line 123 of file init.cpp.

◆ CHKmes

char CHKmes[] = "The user defined name, %s, already exists\n"

static

Definition at line 116 of file init.cpp.

◆ clamp_resist

double clamp_resist

Definition at line 123 of file init.cpp.

◆ dt

double dt

Definition at line 123 of file init.cpp.

◆ hoc_default_dll_loaded_

double hoc_default_dll_loaded_

Definition at line 266 of file hoc_init.cpp.

◆ htablemax

double htablemax

Definition at line 123 of file init.cpp.

◆ htablemin

double htablemin

Definition at line 123 of file init.cpp.

◆ memb_func

Memb_func* memb_func

Definition at line 161 of file init.cpp.

◆ memb_func_size_

int memb_func_size_

static

Definition at line 160 of file init.cpp.

◆ memb_list

Memb_list* memb_list

Definition at line 162 of file init.cpp.

◆ memb_order_

short* memb_order_

Definition at line 163 of file init.cpp.

◆ n_memb_func

int n_memb_func

Definition at line 471 of file init.cpp.

◆ nmodl_version_

char nmodl_version_[]

static

Initial value:

=

"7.7.0"

Definition at line 20 of file init.cpp.

◆ nrn_artcell_qindex_

short* nrn_artcell_qindex_

Definition at line 232 of file init.cpp.

◆ nrn_bbcore_read_

bbcore_write_t* nrn_bbcore_read_

Definition at line 191 of file init.cpp.

◆ nrn_bbcore_write_

bbcore_write_t* nrn_bbcore_write_

Definition at line 190 of file init.cpp.

◆ nrn_dparam_ptr_end_

int* nrn_dparam_ptr_end_

Definition at line 181 of file init.cpp.

◆ nrn_dparam_ptr_start_

int* nrn_dparam_ptr_start_

Definition at line 180 of file init.cpp.

◆ nrn_fornetcon_cnt_

int nrn_fornetcon_cnt_

Definition at line 218 of file init.cpp.

◆ nrn_fornetcon_index_

int* nrn_fornetcon_index_

Definition at line 220 of file init.cpp.

◆ nrn_fornetcon_type_

int* nrn_fornetcon_type_

Definition at line 219 of file init.cpp.

◆ nrn_global_ncell

int nrn_global_ncell = 0

Definition at line 127 of file init.cpp.

◆ nrn_has_net_event_

int* nrn_has_net_event_

Definition at line 177 of file init.cpp.

◆ nrn_has_net_event_cnt_

int nrn_has_net_event_cnt_

Definition at line 176 of file init.cpp.

◆ nrn_is_artificial_

short* nrn_is_artificial_

Definition at line 231 of file init.cpp.

◆ nrn_istty_

int nrn_istty_

Definition at line 870 of file hoc.cpp.

◆ nrn_load_dll_called_

Symlist* nrn_load_dll_called_

Definition at line 17 of file hocusr.cpp.

◆ nrn_netrec_state_adjust

int nrn_netrec_state_adjust = 0

Definition at line 124 of file init.cpp.

◆ nrn_nmodl_filename_

const char** nrn_nmodl_filename_

Definition at line 206 of file init.cpp.

◆ nrn_nmodl_text_

const char** nrn_nmodl_text_

Definition at line 201 of file init.cpp.

◆ nrn_nobanner_

int nrn_nobanner_

Definition at line 130 of file init.cpp.

◆ nrn_pnt_template_

cTemplate** nrn_pnt_template_

Definition at line 169 of file init.cpp.

◆ nrn_prop_dparam_size_

int* nrn_prop_dparam_size_

Definition at line 179 of file init.cpp.

◆ nrn_prop_param_size_

int* nrn_prop_param_size_

Definition at line 178 of file init.cpp.

◆ nrn_sparse_partrans

int nrn_sparse_partrans = 0

Definition at line 125 of file init.cpp.

◆ nrn_watch_allocate_

NrnWatchAllocateFunc_t* nrn_watch_allocate_

Definition at line 182 of file init.cpp.

◆ nrnpy_reg_mech_p_

void(* nrnpy_reg_mech_p_) (int)

Definition at line 118 of file init.cpp.

◆ pnt_map

char* pnt_map

Definition at line 166 of file init.cpp.

◆ pnt_receive

pnt_receive_t* pnt_receive

Definition at line 171 of file init.cpp.

◆ pnt_receive_init

pnt_receive_init_t* pnt_receive_init

Definition at line 172 of file init.cpp.

◆ pnt_receive_size

short* pnt_receive_size

Definition at line 173 of file init.cpp.

◆ point_process

Point_process** point_process

Definition at line 165 of file init.cpp.

◆ pointsym

Symbol** pointsym

Definition at line 164 of file init.cpp.

◆ pointtype

int pointtype = 1

static

Definition at line 470 of file init.cpp.

◆ scdoub

DoubScal scdoub[]

static

Initial value:

= {
    "t", &t,
    "dt", &dt,
    0,0
}

Definition at line 331 of file init.cpp.

◆ secondorder

int secondorder =0

Definition at line 120 of file init.cpp.

◆ section_list

hoc_List* section_list

Definition at line 126 of file init.cpp.

◆ state_discon_allowed_

int state_discon_allowed_

Definition at line 121 of file init.cpp.

◆ state_discon_flag_

int state_discon_flag_ = 0

Definition at line 884 of file init.cpp.

◆ t

double t

Definition at line 123 of file init.cpp.

Macros

Typedefs

Functions

Variables

Macro Definition Documentation

◆ CHECK

Typedef Documentation

◆ bbcore_write_t

Function Documentation

◆ _cvode_abstol()

◆ _modl_cleanup()

◆ _modl_get_dt_thread()

◆ _modl_set_dt()

◆ _modl_set_dt_thread()

◆ _nrn_setdata_reg()

◆ _nrn_thread_reg()

◆ _nrn_thread_table_reg()

◆ add_nrn_artcell()

◆ add_nrn_fornetcons()

◆ add_nrn_has_net_event()

◆ class2oc()

◆ hoc_nrn_load_dll()

◆ hoc_reg_ba()

◆ hoc_reg_bbcore_read()

◆ hoc_reg_bbcore_write()

◆ hoc_reg_nmodl_filename()

◆ hoc_reg_nmodl_text()

◆ hoc_reg_watch_allocate()

◆ hoc_register_cvode()

◆ hoc_register_dparam_semantics()

◆ hoc_register_limits()

◆ hoc_register_prop_size()

◆ hoc_register_synonym()

◆ hoc_register_tolerance()

◆ hoc_register_units()

◆ initnrn()

◆ mswin_load_dll()

◆ node_construct()

◆ nrn_call_mech_func()

◆ nrn_is_artificial()

◆ nrn_load_dll_recover_error()

◆ nrn_load_name_check()

◆ nrn_pointing()

◆ nrn_realpath_dlopen()

◆ nrn_register_mech_common()

◆ nrn_threads_create()

◆ nrn_writes_conc()

◆ nrnunit_use_legacy()

◆ point_reg_helper()

◆ point_register_mech()

◆ register_destructor()

◆ register_mech()

◆ state_discontinuity()

Variable Documentation

◆ _hoc_parm_limits

◆ _hoc_parm_units

◆ _ninits

◆ bamech_

◆ banner

◆ celsius

◆ CHKmes

◆ clamp_resist

◆ dt

◆ hoc_default_dll_loaded_

◆ htablemax

◆ htablemin

◆ memb_func

◆ memb_func_size_

◆ memb_list

◆ memb_order_

◆ n_memb_func

◆ nmodl_version_

◆ nrn_artcell_qindex_

◆ nrn_bbcore_read_

◆ nrn_bbcore_write_

◆ nrn_dparam_ptr_end_

◆ nrn_dparam_ptr_start_

◆ nrn_fornetcon_cnt_

◆ nrn_fornetcon_index_

◆ nrn_fornetcon_type_