#include <string>
#include <vector>

Macros
#define	writeint(p, size) writeint_(p, size, f)

#define	writedbl(p, size) writedbl_(p, size, f)

Typedefs
typedef void(*	bbcore_write_t) (double , int , int , int , double , Datum , Datum , NrnThread )

Functions
void	create_dir_path (const std::string &path)
	create directory with given path More...

std::string	get_write_path ()

std::string	get_filename (const std::string &path, std::string file_name)

template<typename T >
T *	begin_ptr (std::vector< T > &v)

void	write_memb_mech_types (const char *fname)

void	write_globals (const char *fname)

void	write_nrnthread (const char *fname, NrnThread &nt, CellGroup &cg)

void	writeint_ (int p, size_t size, FILE f)

void	writedbl_ (double p, size_t size, FILE f)

void	write_contiguous_art_data (double *data, int nitem, int szitem, FILE f)

double *	contiguous_art_data (double **data, int nitem, int szitem)

void	write_nrnthread_task (const char , CellGroup cgs, bool append)
	Write all dataset ids to files.dat. More...

void	nrnbbcore_vecplay_write (FILE *f, NrnThread &nt)

void	nrn_write_mapping_info (const char *path, int gid, NrnMappingInfo &minfo)
	dump mapping information to gid_3.dat file More...

Variables
const char *	bbcore_write_version

int	chkpnt

Macro Definition Documentation

◆ writedbl

#define writedbl	(	p,
		size
	)	writedbl_(p, size, f)

Definition at line 36 of file nrncore_io.h.

◆ writeint

#define writeint	(	p,
		size
	)	writeint_(p, size, f)

Definition at line 35 of file nrncore_io.h.

Typedef Documentation

◆ bbcore_write_t

typedef void(* bbcore_write_t) (double *, int *, int *, int *, double *, Datum *, Datum *, NrnThread *)

Definition at line 37 of file nrncore_io.h.

Function Documentation

◆ begin_ptr()

template<typename T >

T* begin_ptr ( std::vector< T > & v )

inline

Definition at line 18 of file nrncore_io.h.

◆ contiguous_art_data()

double* contiguous_art_data	(	double **	data,
		int	nitem,
		int	szitem
	)

Definition at line 290 of file nrncore_io.cpp.

◆ create_dir_path()

void create_dir_path ( const std::string & path )

create directory with given path

Definition at line 28 of file nrncore_io.cpp.

◆ get_filename()

std::string get_filename	(	const std::string &	path,
		std::string	file_name
	)

Definition at line 51 of file nrncore_io.cpp.

◆ get_write_path()

std::string get_write_path ( )

Definition at line 43 of file nrncore_io.cpp.

◆ nrn_write_mapping_info()

void nrn_write_mapping_info	(	const char *	path,
		int	gid,
		NrnMappingInfo &	minfo
	)

dump mapping information to gid_3.dat file

full path of mapping file

number of gids in NrnThread

all cells mapping information in NrnThread

gid, #section, #compartments, #sectionlists

section list name, number of sections, number of segments

section - segment mapping

Definition at line 502 of file nrncore_io.cpp.

◆ nrnbbcore_vecplay_write()

void nrnbbcore_vecplay_write	(	FILE *	f,
		NrnThread &	nt
	)

Definition at line 302 of file nrncore_io.cpp.

◆ write_contiguous_art_data()

void write_contiguous_art_data	(	double **	data,
		int	nitem,
		int	szitem,
		FILE *	f
	)

Definition at line 280 of file nrncore_io.cpp.

◆ write_globals()

void write_globals ( const char * fname )

Definition at line 72 of file nrncore_io.cpp.

◆ write_memb_mech_types()

void write_memb_mech_types ( const char * fname )

Definition at line 58 of file nrncore_io.cpp.

◆ write_nrnthread()

void write_nrnthread	(	const char *	fname,
		NrnThread &	nt,
		CellGroup &	cg
	)

Definition at line 114 of file nrncore_io.cpp.

◆ write_nrnthread_task()

void write_nrnthread_task	(	const char *	path,
		CellGroup *	cgs,
		bool	append
	)

Write all dataset ids to files.dat.

Format of the files.dat file is:

version string
-1 (if model uses gap junction)
n (number of datasets) in format %10d
id1
id2
...
idN

Writing the file with task, correspondent number of threads and list of correspondent first gids

Definition at line 348 of file nrncore_io.cpp.

◆ writedbl_()

void writedbl_	(	double *	p,
		size_t	size,
		FILE *	f
	)

Definition at line 271 of file nrncore_io.cpp.

◆ writeint_()

void writeint_	(	int *	p,
		size_t	size,
		FILE *	f
	)

Definition at line 265 of file nrncore_io.cpp.

Variable Documentation

◆ bbcore_write_version

const char* bbcore_write_version

Definition at line 25 of file nrncore_io.cpp.

◆ chkpnt

int chkpnt

Definition at line 24 of file nrncore_io.cpp.

Macros

Typedefs

Functions

Variables