#include <kschan.h>

Public Member Functions
	KSChan (Object *, bool is_point=false)

virtual	~KSChan ()

virtual void	alloc (Prop *)

virtual void	init (int, Node , double , Datum *, NrnThread )

virtual void	cur (int, Node , double , Datum **)

virtual void	jacob (int, Node , double , Datum **)

virtual void	state (int, Node , double , Datum *, NrnThread )

void	add_channel (const char **)

virtual int	count ()

virtual void	map (int, double , double , double , Datum , double *)

virtual void	spec (int, Node , double , Datum **)

virtual void	matsol (int, Node , double , Datum *, NrnThread )

virtual void	cv_sc_update (int, Node , double , Datum *, NrnThread )

double	conductance (double gmax, double *state)

int	state (const char *name)

const char *	state (int index)

int	trans_index (const char src, const char target)

int	trans_index (int src, int target)

int	gate_index (int state_index)

bool	is_point ()

bool	is_single ()

void	set_single (bool, bool update=true)

void	destroy_pnt (Point_process *)

int	nsingle (Point_process *)

void	nsingle (Point_process *, int)

double	alpha (double v, int, int)

double	beta (double v, int, int)

void	setstructure (Vect *)

void	setname (const char *)

void	setsname (int, const char *)

void	setion (const char *)

void	setligand (int i, const char *)

void	settype (KSTransition , int type, const char )

void	setivrelation (int)

KSState *	add_hhstate (const char *)

KSState *	add_ksstate (int igate, const char *)

void	remove_state (int)

KSTransition *	add_transition (int src, int target, const char *ligand)

void	remove_transition (int)

void	setcond ()

void	power (KSGateComplex *, int)

void	usetable (bool, int size, double vmin, double vmax)

void	usetable (bool)

int	usetable (double vmin, double vmax)

bool	usetable ()

void	check_table_thread (NrnThread *)

Public Attributes
CopyString	name_

CopyString	ion_

double	gmax_deflt_

double	erev_deflt_

int	cond_model_

KSIv *	iv_relation_

int	ngate_

int	ntrans_

int	ivkstrans_

int	iligtrans_

int	nhhstate_

int	nksstate_

int	nstate_

KSState *	state_

KSGateComplex *	gc_

KSTransition *	trans_

Symbol *	ion_sym_

int	nligand_

Symbol **	ligands_

Object *	obj_

KSSingle *	single_

Private Member Functions
void	free1 ()

void	build ()

void	setupmat ()

void	fillmat (double v, Datum *pd)

void	mat_dt (double dt, double *p)

void	solvemat (double *)

void	mulmat (double , double )

void	ion_consist ()

void	ligand_consist (int, int, Prop , Node )

Prop *	needion (Symbol , Node , Prop *)

void	state_consist (int shift=0)

void	sname_install ()

Symbol *	looksym (const char , Symbol tmplt=NULL)

Symbol *	installsym (const char , int, Symbol tmplt=NULL)

void	freesym (Symbol , Symbol tmplt=NULL)

Symbol **	newppsym (int)

void	delete_schan_node_data ()

void	alloc_schan_node_data ()

void	update_prop ()

KSState *	state_insert (int i, const char *name, double frac)

void	state_remove (int i)

KSGateComplex *	gate_insert (int ig, int is, int power)

void	gate_remove (int i)

KSTransition *	trans_insert (int i, int src, int target)

void	trans_remove (int i)

void	check_struct ()

Private Attributes
int	state_size_

int	gate_size_

int	trans_size_

bool	is_point_

bool	is_single_

int	pointtype_

int	mechtype_

int	cvode_ieq_

Symbol *	mechsym_

Symbol *	rlsym_

char *	mat_

double **	elms_

double **	diag_

int	dsize_

int	psize_

int	soffset_

int	gmaxoffset_

int	ppoff_

double	vmin_

double	vmax_

double	dvinv_

double	dtsav_

int	hh_tab_size_

bool	usetable_

Detailed Description

Definition at line 239 of file kschan.h.

Constructor & Destructor Documentation

◆ KSChan()

KSChan::KSChan	(	Object *	obj,
		bool	is_point = `false`
	)

Definition at line 871 of file kschan.cpp.

◆ ~KSChan()

KSChan::~KSChan ( )

virtual

Definition at line 906 of file kschan.cpp.

Member Function Documentation

◆ add_channel()

void KSChan::add_channel ( const char ** m )

Definition at line 846 of file kschan.cpp.

◆ add_hhstate()

KSState * KSChan::add_hhstate ( const char * name )

Definition at line 1521 of file kschan.cpp.

◆ add_ksstate()

KSState * KSChan::add_ksstate	(	int	igate,
		const char *	name
	)

Definition at line 1548 of file kschan.cpp.

◆ add_transition()

KSTransition * KSChan::add_transition	(	int	src,
		int	target,
		const char *	ligand
	)

Definition at line 1639 of file kschan.cpp.

◆ alloc()

void KSChan::alloc ( Prop * prop )

virtual

Definition at line 2152 of file kschan.cpp.

◆ alloc_schan_node_data()

void KSChan::alloc_schan_node_data ( )

private

Definition at line 2358 of file kschan.cpp.

◆ alpha()

double KSChan::alpha	(	double	v,
		int	,
		int
	)

inline

Definition at line 274 of file kschan.h.

◆ beta()

double KSChan::beta	(	double	v,
		int	,
		int
	)

inline

Definition at line 275 of file kschan.h.

◆ build()

void KSChan::build ( )

private

Definition at line 908 of file kschan.cpp.

◆ check_struct()

void KSChan::check_struct ( )

private

Definition at line 1664 of file kschan.cpp.

◆ check_table_thread()

void KSChan::check_table_thread ( NrnThread * nt )

Definition at line 3071 of file kschan.cpp.

◆ conductance()

double KSChan::conductance	(	double	gmax,
		double *	state
	)

Definition at line 2663 of file kschan.cpp.

◆ count()

int KSChan::count ( )

virtual

Definition at line 2841 of file kschan.cpp.

◆ cur()

void KSChan::cur	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd
	)

virtual

Definition at line 2512 of file kschan.cpp.

◆ cv_sc_update()

void KSChan::cv_sc_update	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd,
		NrnThread *	nt
	)

virtual

Definition at line 2908 of file kschan.cpp.

◆ delete_schan_node_data()

void KSChan::delete_schan_node_data ( )

private

Definition at line 2345 of file kschan.cpp.

◆ destroy_pnt()

void KSChan::destroy_pnt ( Point_process * pp )

Definition at line 152 of file kschan.cpp.

◆ fillmat()

void KSChan::fillmat	(	double	v,
		Datum *	pd
	)

private

Definition at line 2097 of file kschan.cpp.

◆ free1()

void KSChan::free1 ( )

private

Definition at line 1261 of file kschan.cpp.

◆ freesym()

void KSChan::freesym	(	Symbol *	s,
		Symbol *	tmplt = `NULL`
	)

private

Definition at line 2044 of file kschan.cpp.

◆ gate_index()

int KSChan::gate_index ( int state_index )

Definition at line 1075 of file kschan.cpp.

◆ gate_insert()

KSGateComplex * KSChan::gate_insert	(	int	ig,
		int	is,
		int	power
	)

private

Definition at line 1767 of file kschan.cpp.

◆ gate_remove()

void KSChan::gate_remove ( int i )

private

Definition at line 1796 of file kschan.cpp.

◆ init()

void KSChan::init	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd,
		NrnThread *	nt
	)

virtual

Definition at line 2369 of file kschan.cpp.

◆ installsym()

Symbol * KSChan::installsym	(	const char *	name,
		int	type,
		Symbol *	tmplt = `NULL`
	)

private

Definition at line 2029 of file kschan.cpp.

◆ ion_consist()

void KSChan::ion_consist ( )

private

Definition at line 2245 of file kschan.cpp.

◆ is_point()

bool KSChan::is_point ( )

inline

Definition at line 268 of file kschan.h.

◆ is_single()

bool KSChan::is_single ( )

inline

Definition at line 269 of file kschan.h.

◆ jacob()

void KSChan::jacob	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd
	)

virtual

Definition at line 2535 of file kschan.cpp.

◆ ligand_consist()

void KSChan::ligand_consist	(	int	j,
		int	poff,
		Prop *	p,
		Node *	nd
	)

private

Definition at line 2296 of file kschan.cpp.

◆ looksym()

Symbol * KSChan::looksym	(	const char *	name,
		Symbol *	tmplt = `NULL`
	)

private

Definition at line 2016 of file kschan.cpp.

◆ map()

void KSChan::map	(	int	ieq,
		double **	pv,
		double **	pvdot,
		double *	p,
		Datum *	pd,
		double *	atol
	)

virtual

Definition at line 2843 of file kschan.cpp.

◆ mat_dt()

void KSChan::mat_dt	(	double	dt,
		double *	p
	)

private

Definition at line 2121 of file kschan.cpp.

◆ matsol()

void KSChan::matsol	(	int	n,
		Node **	nd,
		double **	p,
		Datum **	ppd,
		NrnThread *	nt
	)

virtual

Definition at line 2884 of file kschan.cpp.

◆ mulmat()

void KSChan::mulmat	(	double *	s,
		double *	ds
	)

private

Definition at line 2148 of file kschan.cpp.

◆ needion()

Prop * KSChan::needion	(	Symbol *	s,
		Node *	nd,
		Prop *	pm
	)

private

Definition at line 2216 of file kschan.cpp.

◆ newppsym()

Symbol ** KSChan::newppsym ( int n )

private

Definition at line 2039 of file kschan.cpp.

◆ nsingle() [1/2]

int KSChan::nsingle ( Point_process * pp )

Definition at line 423 of file kssingle.cpp.

◆ nsingle() [2/2]

void KSChan::nsingle	(	Point_process *	pp,
		int	n
	)

Definition at line 417 of file kssingle.cpp.

◆ power()

void KSChan::power	(	KSGateComplex *	gc,
		int	p
	)

Definition at line 1017 of file kschan.cpp.

◆ remove_state()

void KSChan::remove_state ( int is )

Definition at line 1580 of file kschan.cpp.

◆ remove_transition()

void KSChan::remove_transition ( int it )

Definition at line 1652 of file kschan.cpp.

◆ set_single()

void KSChan::set_single	(	bool	b,
		bool	update = `true`
	)

Definition at line 1024 of file kschan.cpp.

◆ setcond()

void KSChan::setcond ( )

Definition at line 1285 of file kschan.cpp.

◆ setion()

void KSChan::setion ( const char * s )

Definition at line 1166 of file kschan.cpp.

◆ setivrelation()

void KSChan::setivrelation ( int )

◆ setligand()

void KSChan::setligand	(	int	i,
		const char *	lig
	)

Definition at line 1330 of file kschan.cpp.

◆ setname()

void KSChan::setname ( const char * s )

Definition at line 961 of file kschan.cpp.

◆ setsname()

void KSChan::setsname	(	int	i,
		const char *	s
	)

Definition at line 1256 of file kschan.cpp.

◆ setstructure()

void KSChan::setstructure ( Vect * vec )

Definition at line 1868 of file kschan.cpp.

◆ settype()

void KSChan::settype	(	KSTransition *	t,
		int	type,
		const char *	lig
	)

Definition at line 1350 of file kschan.cpp.

◆ setupmat()

void KSChan::setupmat ( )

private

Definition at line 2064 of file kschan.cpp.

◆ sname_install()

void KSChan::sname_install ( )

private

Definition at line 1958 of file kschan.cpp.

◆ solvemat()

void KSChan::solvemat ( double * s )

private

Definition at line 2132 of file kschan.cpp.

◆ spec()

void KSChan::spec	(	int	n,
		Node **	nd,
		double **	p,
		Datum **	ppd
	)

virtual

Definition at line 2854 of file kschan.cpp.

◆ state() [1/3]

void KSChan::state	(	int	n,
		Node **	nd,
		double **	pp,
		Datum **	ppd,
		NrnThread *	nt
	)

virtual

Definition at line 2406 of file kschan.cpp.

◆ state() [2/3]

int KSChan::state ( const char * name )

Definition at line 1007 of file kschan.cpp.

◆ state() [3/3]

const char * KSChan::state ( int index )

Definition at line 1050 of file kschan.cpp.

◆ state_consist()

void KSChan::state_consist ( int shift = 0 )

private

Definition at line 2304 of file kschan.cpp.

◆ state_insert()

KSState * KSChan::state_insert	(	int	i,
		const char *	name,
		double	frac
	)

private

Definition at line 1713 of file kschan.cpp.

◆ state_remove()

void KSChan::state_remove ( int i )

private

Definition at line 1746 of file kschan.cpp.

◆ trans_index() [1/2]

int KSChan::trans_index	(	const char *	src,
		const char *	target
	)

Definition at line 1054 of file kschan.cpp.

◆ trans_index() [2/2]

int KSChan::trans_index	(	int	src,
		int	target
	)

Definition at line 1065 of file kschan.cpp.

◆ trans_insert()

KSTransition * KSChan::trans_insert	(	int	i,
		int	src,
		int	target
	)

private

Definition at line 1812 of file kschan.cpp.

◆ trans_remove()

void KSChan::trans_remove ( int i )

private

Definition at line 1846 of file kschan.cpp.

◆ update_prop()

void KSChan::update_prop ( )

private

Definition at line 1085 of file kschan.cpp.

◆ usetable() [1/4]

void KSChan::usetable	(	bool	use,
		int	size,
		double	vmin,
		double	vmax
	)

Definition at line 3013 of file kschan.cpp.

◆ usetable() [2/4]

void KSChan::usetable ( bool use )

Definition at line 3041 of file kschan.cpp.

◆ usetable() [3/4]

int KSChan::usetable	(	double *	vmin,
		double *	vmax
	)

Definition at line 3065 of file kschan.cpp.

◆ usetable() [4/4]

bool KSChan::usetable ( )

inline

Definition at line 296 of file kschan.h.

Member Data Documentation

◆ cond_model_

int KSChan::cond_model_

Definition at line 339 of file kschan.h.

◆ cvode_ieq_

int KSChan::cvode_ieq_

private

Definition at line 360 of file kschan.h.

◆ diag_

double** KSChan::diag_

private

Definition at line 365 of file kschan.h.

◆ dsize_

int KSChan::dsize_

private

Definition at line 366 of file kschan.h.

◆ dtsav_

double KSChan::dtsav_

private

Definition at line 374 of file kschan.h.

◆ dvinv_

double KSChan::dvinv_

private

Definition at line 374 of file kschan.h.

◆ elms_

double** KSChan::elms_

private

Definition at line 364 of file kschan.h.

◆ erev_deflt_

double KSChan::erev_deflt_

Definition at line 338 of file kschan.h.

◆ gate_size_

int KSChan::gate_size_

private

Definition at line 327 of file kschan.h.

◆ gc_

KSGateComplex* KSChan::gc_

Definition at line 352 of file kschan.h.

◆ gmax_deflt_

double KSChan::gmax_deflt_

Definition at line 337 of file kschan.h.

◆ gmaxoffset_

int KSChan::gmaxoffset_

private

Definition at line 369 of file kschan.h.

◆ hh_tab_size_

int KSChan::hh_tab_size_

private

Definition at line 375 of file kschan.h.

◆ iligtrans_

int KSChan::iligtrans_

Definition at line 344 of file kschan.h.

◆ ion_

CopyString KSChan::ion_

Definition at line 336 of file kschan.h.

◆ ion_sym_

Symbol* KSChan::ion_sym_

Definition at line 354 of file kschan.h.

◆ is_point_

bool KSChan::is_point_

private

Definition at line 329 of file kschan.h.

◆ is_single_

bool KSChan::is_single_

private

Definition at line 330 of file kschan.h.

◆ iv_relation_

KSIv* KSChan::iv_relation_

Definition at line 340 of file kschan.h.

◆ ivkstrans_

int KSChan::ivkstrans_

Definition at line 343 of file kschan.h.

◆ ligands_

Symbol** KSChan::ligands_

Definition at line 356 of file kschan.h.

◆ mat_

char* KSChan::mat_

private

Definition at line 363 of file kschan.h.

◆ mechsym_

Symbol* KSChan::mechsym_

private

Definition at line 361 of file kschan.h.

◆ mechtype_

int KSChan::mechtype_

private

Definition at line 333 of file kschan.h.

◆ name_

CopyString KSChan::name_

Definition at line 335 of file kschan.h.

◆ ngate_

int KSChan::ngate_

Definition at line 341 of file kschan.h.

◆ nhhstate_

int KSChan::nhhstate_

Definition at line 346 of file kschan.h.

◆ nksstate_

int KSChan::nksstate_

Definition at line 347 of file kschan.h.

◆ nligand_

int KSChan::nligand_

Definition at line 355 of file kschan.h.

◆ nstate_

int KSChan::nstate_

Definition at line 348 of file kschan.h.

◆ ntrans_

int KSChan::ntrans_

Definition at line 342 of file kschan.h.

◆ obj_

Object* KSChan::obj_

Definition at line 357 of file kschan.h.

◆ pointtype_

int KSChan::pointtype_

private

Definition at line 332 of file kschan.h.

◆ ppoff_

int KSChan::ppoff_

private

Definition at line 371 of file kschan.h.

◆ psize_

int KSChan::psize_

private

Definition at line 367 of file kschan.h.

◆ rlsym_

Symbol* KSChan::rlsym_

private

Definition at line 362 of file kschan.h.

◆ single_

KSSingle* KSChan::single_

Definition at line 358 of file kschan.h.

◆ soffset_

int KSChan::soffset_

private

Definition at line 368 of file kschan.h.

◆ state_

KSState* KSChan::state_

Definition at line 351 of file kschan.h.

◆ state_size_

int KSChan::state_size_

private

Definition at line 326 of file kschan.h.

◆ trans_

KSTransition* KSChan::trans_

Definition at line 353 of file kschan.h.

◆ trans_size_

int KSChan::trans_size_

private

Definition at line 328 of file kschan.h.

◆ usetable_

bool KSChan::usetable_

private

Definition at line 376 of file kschan.h.

◆ vmax_

double KSChan::vmax_

private

Definition at line 374 of file kschan.h.

◆ vmin_

double KSChan::vmin_

private

Definition at line 374 of file kschan.h.

The documentation for this class was generated from the following files:

/home/docs/checkouts/readthedocs.org/user_builds/nrn/checkouts/8.1.0/src/nrniv/kschan.h
/home/docs/checkouts/readthedocs.org/user_builds/nrn/checkouts/8.1.0/src/nrniv/kschan.cpp
/home/docs/checkouts/readthedocs.org/user_builds/nrn/checkouts/8.1.0/src/nrniv/kssingle.cpp

Public Member Functions

Public Attributes

Private Member Functions

Private Attributes

Detailed Description

Constructor & Destructor Documentation

◆ KSChan()

◆ ~KSChan()

Member Function Documentation

◆ add_channel()

◆ add_hhstate()

◆ add_ksstate()

◆ add_transition()

◆ alloc()

◆ alloc_schan_node_data()

◆ alpha()

◆ beta()

◆ build()

◆ check_struct()

◆ check_table_thread()

◆ conductance()

◆ count()

◆ cur()

◆ cv_sc_update()

◆ delete_schan_node_data()

◆ destroy_pnt()

◆ fillmat()

◆ free1()

◆ freesym()

◆ gate_index()

◆ gate_insert()

◆ gate_remove()

◆ init()

◆ installsym()

◆ ion_consist()

◆ is_point()

◆ is_single()

◆ jacob()

◆ ligand_consist()

◆ looksym()

◆ map()

◆ mat_dt()

◆ matsol()

◆ mulmat()

◆ needion()

◆ newppsym()

◆ nsingle() [1/2]

◆ nsingle() [2/2]

◆ power()

◆ remove_state()

◆ remove_transition()

◆ set_single()

◆ setcond()

◆ setion()

◆ setivrelation()

◆ setligand()

◆ setname()

◆ setsname()

◆ setstructure()

◆ settype()

◆ setupmat()

◆ sname_install()

◆ solvemat()

◆ spec()

◆ state() [1/3]

◆ state() [2/3]

◆ state() [3/3]

◆ state_consist()

◆ state_insert()

◆ state_remove()

◆ trans_index() [1/2]

◆ trans_index() [2/2]

◆ trans_insert()

◆ trans_remove()

◆ update_prop()

◆ usetable() [1/4]

◆ usetable() [2/4]

◆ usetable() [3/4]

◆ usetable() [4/4]

Member Data Documentation