#include <../../nrnconf.h>
#include <nrnmpi.h>
#include <stdlib.h>
#include <errno.h>
#include "neuron.h"
#include "section.h"
#include "nrniv_mf.h"
#include "multisplit.h"
#include "utils/profile/profiler_interface.h"
#include "nonvintblock.h"
#include "nrncvode.h"
#include "spmatrix.h"
#include <vector>
#include "profile.h"

Macros
#define	nrnoc_fadvance_c

#define	NRNCTIME 1

#define	NONVINT_ODE_COUNT 5

#define	CTBEGIN double wt = nrnmpi_wtime();

#define	CTADD nth->_ctime += nrnmpi_wtime() - wt;

#define	ELIMINATE_T_ROUNDOFF 0

#define	PROFILE 0

#define	SUCCESS 0

#define	der_(arg) p[der[arg]]

#define	var_(arg) p[var[arg]]

Typedefs
typedef int(*	NonVintBlockItem) (int method, int size, double pd1, double pd2, int tid)

Functions
double	nrnmpi_wtime ()

double	chkarg (int, double low, double high)

void	nrn_fixed_step ()

void	nrn_fixed_step_group (int)

static void *	nrn_fixed_step_thread (NrnThread *)

static void *	nrn_fixed_step_group_thread (NrnThread *nth)

static void *	nrn_fixed_step_lastpart (NrnThread *)

void *	setup_tree_matrix (NrnThread *)

void	nrn_solve (NrnThread *)

void	nonvint (NrnThread *nt)

void	nrncvode_set_t (double t)

static void *	nrn_ms_treeset_through_triang (NrnThread *)

static void *	nrn_ms_reduce_solve (NrnThread *)

static void *	nrn_ms_bksub (NrnThread *)

static void *	nrn_ms_bksub_through_triang (NrnThread *)

void *	nrn_multisplit_triang (NrnThread *)

void *	nrn_multisplit_reduce_solve (NrnThread *)

void *	nrn_multisplit_bksub (NrnThread *)

static void	update (NrnThread *)

void	fadvance (void)

static void	batch_out ()

static void	batch_open ()

static void	batch_close ()

static void	batch_open (char name, double tstop, double tstep, char comment)

void	batch_run (void)

static void	dt2thread (double adt)

static void *	daspk_init_step_thread (NrnThread *nt)

void	nrn_daspk_init_step (double tt, double dteps, int upd)

void	nrn_extra_scatter_gather (int direction, int tid)

void	nrn_ba (NrnThread *, int)

void	nrn_calc_fast_imem (NrnThread *_nt)

void	nrn_calc_fast_imem_fixedstep_init (NrnThread *_nt)

void	fcurrent (void)

void	nrn_print_matrix (NrnThread *_nt)

void	fmatrix (void)

int	nrn_errno_check (int i)

void	frecord_init (void)

void	verify_structure (void)

void	nrn_finitialize (int setv, double v)

void	finitialize (void)

void	batch_save (void)

int	nrn_nonvint_block_exe (int method, int size, double pd1, double pd2, int tid)

int	set_nonvint_block (NonVintBlockItem func)

int	unset_nonvint_block (NonVintBlockItem func)

int	nrn_nonvint_block_helper (int method, int size, double pd1, double pd2, int tid)

int	euler_thread (int neqn, int var, int der, double p, int(func)(double , Datum , Datum , NrnThread ), Datum ppvar, Datum thread, NrnThread *nt)

Variables
double *	nrn_mech_wtime_

double	t

double	dt

void(*	nrn_multisplit_setup_ )()

void(*	nrn_allthread_handle )()

int	tree_changed

int	diam_changed

int	state_discon_allowed_

double	hoc_epsilon

void(*	nrnmpi_v_transfer_ )()

void(*	nrnthread_v_transfer_ )(NrnThread *nt)

void(*	nrnthread_vi_compute_ )(NrnThread *nt)

int	v_structure_change

int	cvode_active_

int	stoprun

int	nrn_use_fast_imem

static FILE *	batch_file

static int	batch_size

static int	batch_n

static double **	batch_var

static int	_upd

static int	step_group_n

static int	step_group_begin

static int	step_group_end

static std::vector< NonVintBlockItem >	nonvint_block_list

Macro Definition Documentation

◆ CTADD

#define CTADD nth->_ctime += nrnmpi_wtime() - wt;

Definition at line 92 of file fadvance.cpp.

◆ CTBEGIN

#define CTBEGIN double wt = nrnmpi_wtime();

Definition at line 91 of file fadvance.cpp.

◆ der_

#define der_ ( arg ) p[der[arg]]

Definition at line 1123 of file fadvance.cpp.

◆ ELIMINATE_T_ROUNDOFF

#define ELIMINATE_T_ROUNDOFF 0

Definition at line 98 of file fadvance.cpp.

◆ NONVINT_ODE_COUNT

#define NONVINT_ODE_COUNT 5

Definition at line 88 of file fadvance.cpp.

◆ NRNCTIME

#define NRNCTIME 1

Definition at line 87 of file fadvance.cpp.

◆ nrnoc_fadvance_c

#define nrnoc_fadvance_c

Definition at line 10 of file fadvance.cpp.

◆ PROFILE

#define PROFILE 0

Definition at line 164 of file fadvance.cpp.

◆ SUCCESS

#define SUCCESS 0

Definition at line 1122 of file fadvance.cpp.

◆ var_

#define var_ ( arg ) p[var[arg]]

Definition at line 1124 of file fadvance.cpp.

Typedef Documentation

◆ NonVintBlockItem

typedef int(* NonVintBlockItem) (int method, int size, double *pd1, double *pd2, int tid)

Definition at line 1054 of file fadvance.cpp.

Function Documentation

◆ batch_close()

static void batch_close ( )

Definition at line 1007 of file fadvance.cpp.

◆ batch_open() [1/2]

static void batch_open ( )

◆ batch_open() [2/2]

static void batch_open	(	char *	name,
		double	tstop,
		double	tstep,
		char *	comment
	)

static

Definition at line 207 of file fadvance.cpp.

◆ batch_out()

static void batch_out ( )

static

Definition at line 1014 of file fadvance.cpp.

◆ batch_run()

void batch_run ( void )

Definition at line 243 of file fadvance.cpp.

◆ batch_save()

void batch_save ( void )

Definition at line 1024 of file fadvance.cpp.

◆ chkarg()

double chkarg	(	int	,
		double	low,
		double	high
	)

Definition at line 608 of file code2.cpp.

◆ daspk_init_step_thread()

static void* daspk_init_step_thread ( NrnThread * nt )

static

Definition at line 312 of file fadvance.cpp.

◆ dt2thread()

static void dt2thread ( double adt )

static

Definition at line 295 of file fadvance.cpp.

◆ euler_thread()

int euler_thread	(	int	neqn,
		int *	var,
		int *	der,
		double *	p,
		int()(double , Datum , Datum , NrnThread *)	func,
		Datum *	ppvar,
		Datum *	thread,
		NrnThread *	nt
	)

Definition at line 1127 of file fadvance.cpp.

◆ fadvance()

void fadvance ( void )

Definition at line 167 of file fadvance.cpp.

◆ fcurrent()

void fcurrent ( void )

Definition at line 667 of file fadvance.cpp.

◆ finitialize()

void finitialize ( void )

Definition at line 992 of file fadvance.cpp.

◆ fmatrix()

void fmatrix ( void )

Definition at line 720 of file fadvance.cpp.

◆ frecord_init()

void frecord_init ( void )

Definition at line 809 of file fadvance.cpp.

◆ nonvint()

void nonvint ( NrnThread * nt )

Definition at line 744 of file fadvance.cpp.

◆ nrn_ba()

void nrn_ba	(	NrnThread *	nt,
		int	bat
	)

Definition at line 1041 of file fadvance.cpp.

◆ nrn_calc_fast_imem()

void nrn_calc_fast_imem ( NrnThread * _nt )

Definition at line 623 of file fadvance.cpp.

◆ nrn_calc_fast_imem_fixedstep_init()

void nrn_calc_fast_imem_fixedstep_init ( NrnThread * _nt )

Definition at line 641 of file fadvance.cpp.

◆ nrn_daspk_init_step()

void nrn_daspk_init_step	(	double	tt,
		double	dteps,
		int	upd
	)

Definition at line 321 of file fadvance.cpp.

◆ nrn_errno_check()

int nrn_errno_check ( int i )

Definition at line 784 of file fadvance.cpp.

◆ nrn_extra_scatter_gather()

void nrn_extra_scatter_gather	(	int	direction,
		int	tid
	)

Definition at line 536 of file cvodeobj.cpp.

◆ nrn_finitialize()

void nrn_finitialize	(	int	setv,
		double	v
	)

Definition at line 834 of file fadvance.cpp.

◆ nrn_fixed_step()

void nrn_fixed_step ( )

Definition at line 338 of file fadvance.cpp.

◆ nrn_fixed_step_group()

void nrn_fixed_step_group ( int n )

Definition at line 392 of file fadvance.cpp.

◆ nrn_fixed_step_group_thread()

void * nrn_fixed_step_group_thread ( NrnThread * nth )

static

Definition at line 441 of file fadvance.cpp.

◆ nrn_fixed_step_lastpart()

void * nrn_fixed_step_lastpart ( NrnThread * nth )

static

Definition at line 500 of file fadvance.cpp.

◆ nrn_fixed_step_thread()

void * nrn_fixed_step_thread ( NrnThread * nth )

static

Definition at line 457 of file fadvance.cpp.

◆ nrn_ms_bksub()

void * nrn_ms_bksub ( NrnThread * nth )

static

Definition at line 544 of file fadvance.cpp.

◆ nrn_ms_bksub_through_triang()

void * nrn_ms_bksub_through_triang ( NrnThread * nth )

static

Definition at line 556 of file fadvance.cpp.

◆ nrn_ms_reduce_solve()

void * nrn_ms_reduce_solve ( NrnThread * nth )

static

Definition at line 540 of file fadvance.cpp.

◆ nrn_ms_treeset_through_triang()

void * nrn_ms_treeset_through_triang ( NrnThread * nth )

static

Definition at line 523 of file fadvance.cpp.

◆ nrn_multisplit_bksub()

void* nrn_multisplit_bksub ( NrnThread * )

Definition at line 1852 of file multisplit.cpp.

◆ nrn_multisplit_reduce_solve()

void* nrn_multisplit_reduce_solve ( NrnThread * )

Definition at line 1846 of file multisplit.cpp.

◆ nrn_multisplit_triang()

void* nrn_multisplit_triang ( NrnThread * )

Definition at line 1842 of file multisplit.cpp.

◆ nrn_nonvint_block_exe()

int nrn_nonvint_block_exe	(	int	method,
		int	size,
		double *	pd1,
		double *	pd2,
		int	tid
	)

Definition at line 1058 of file fadvance.cpp.

◆ nrn_nonvint_block_helper()

int nrn_nonvint_block_helper	(	int	method,
		int	size,
		double *	pd1,
		double *	pd2,
		int	tid
	)

Definition at line 1106 of file fadvance.cpp.

◆ nrn_print_matrix()

void nrn_print_matrix ( NrnThread * _nt )

Definition at line 688 of file fadvance.cpp.

◆ nrn_solve()

void nrn_solve ( NrnThread * )

Definition at line 328 of file solve.cpp.

◆ nrncvode_set_t()

void nrncvode_set_t ( double t )

Definition at line 143 of file cvodestb.cpp.

◆ nrnmpi_wtime()

double nrnmpi_wtime ( )

Definition at line 171 of file nrnmpi.cpp.

◆ set_nonvint_block()

int set_nonvint_block ( NonVintBlockItem func )

Definition at line 1079 of file fadvance.cpp.

◆ setup_tree_matrix()

void* setup_tree_matrix ( NrnThread * )

Definition at line 614 of file treeset.cpp.

◆ unset_nonvint_block()

int unset_nonvint_block ( NonVintBlockItem func )

Definition at line 1090 of file fadvance.cpp.

◆ update()

static void update ( NrnThread * _nt )

static

Definition at line 570 of file fadvance.cpp.

◆ verify_structure()

void verify_structure ( void )

Definition at line 821 of file fadvance.cpp.

Variable Documentation

◆ _upd

int _upd

static

Definition at line 311 of file fadvance.cpp.

◆ batch_file

FILE* batch_file

static

Definition at line 202 of file fadvance.cpp.

◆ batch_n

int batch_n

static

Definition at line 204 of file fadvance.cpp.

◆ batch_size

int batch_size

static

Definition at line 203 of file fadvance.cpp.

◆ batch_var

double** batch_var

static

Definition at line 205 of file fadvance.cpp.

◆ cvode_active_

int cvode_active_

Definition at line 158 of file fadvance.cpp.

◆ diam_changed

int diam_changed

Definition at line 23 of file cabcode.cpp.

◆ dt

double dt

Definition at line 123 of file init.cpp.

◆ hoc_epsilon

double hoc_epsilon

Definition at line 260 of file hoc_init.cpp.

◆ nonvint_block_list

std::vector<NonVintBlockItem> nonvint_block_list

static

Definition at line 1056 of file fadvance.cpp.

◆ nrn_allthread_handle

void(* nrn_allthread_handle) ()

Definition at line 69 of file fadvance.cpp.

◆ nrn_mech_wtime_

double* nrn_mech_wtime_

Definition at line 29 of file treeset.cpp.

◆ nrn_multisplit_setup_

void(* nrn_multisplit_setup_) ()

Definition at line 46 of file treeset.cpp.

◆ nrn_use_fast_imem

int nrn_use_fast_imem

Definition at line 162 of file fadvance.cpp.

◆ nrnmpi_v_transfer_

void(* nrnmpi_v_transfer_) ()

Definition at line 147 of file fadvance.cpp.

◆ nrnthread_v_transfer_

void(* nrnthread_v_transfer_) (NrnThread *nt)

Definition at line 148 of file fadvance.cpp.

◆ nrnthread_vi_compute_

void(* nrnthread_vi_compute_) (NrnThread *nt)

Definition at line 150 of file fadvance.cpp.

◆ state_discon_allowed_

int state_discon_allowed_

Definition at line 121 of file init.cpp.

◆ step_group_begin

int step_group_begin

static

Definition at line 389 of file fadvance.cpp.

◆ step_group_end

int step_group_end

static

Definition at line 390 of file fadvance.cpp.

◆ step_group_n

int step_group_n

static

Definition at line 388 of file fadvance.cpp.

◆ t

double t

Definition at line 123 of file init.cpp.

◆ tree_changed

int tree_changed

Definition at line 19 of file cabcode.cpp.

◆ v_structure_change

int v_structure_change

Definition at line 154 of file fadvance.cpp.

Macros

Typedefs

Functions

Variables

Macro Definition Documentation

◆ CTADD

◆ CTBEGIN

◆ der_

◆ ELIMINATE_T_ROUNDOFF

◆ NONVINT_ODE_COUNT

◆ NRNCTIME

◆ nrnoc_fadvance_c

◆ PROFILE

◆ SUCCESS

◆ var_

Typedef Documentation

◆ NonVintBlockItem

Function Documentation

◆ batch_close()

◆ batch_open() [1/2]

◆ batch_open() [2/2]

◆ batch_out()

◆ batch_run()

◆ batch_save()

◆ chkarg()

◆ daspk_init_step_thread()

◆ dt2thread()

◆ euler_thread()

◆ fadvance()

◆ fcurrent()

◆ finitialize()

◆ fmatrix()

◆ frecord_init()

◆ nonvint()

◆ nrn_ba()

◆ nrn_calc_fast_imem()

◆ nrn_calc_fast_imem_fixedstep_init()

◆ nrn_daspk_init_step()

◆ nrn_errno_check()

◆ nrn_extra_scatter_gather()

◆ nrn_finitialize()

◆ nrn_fixed_step()

◆ nrn_fixed_step_group()

◆ nrn_fixed_step_group_thread()

◆ nrn_fixed_step_lastpart()

◆ nrn_fixed_step_thread()

◆ nrn_ms_bksub()

◆ nrn_ms_bksub_through_triang()

◆ nrn_ms_reduce_solve()

◆ nrn_ms_treeset_through_triang()

◆ nrn_multisplit_bksub()

◆ nrn_multisplit_reduce_solve()

◆ nrn_multisplit_triang()

◆ nrn_nonvint_block_exe()

◆ nrn_nonvint_block_helper()

◆ nrn_print_matrix()

◆ nrn_solve()

◆ nrncvode_set_t()

◆ nrnmpi_wtime()

◆ set_nonvint_block()

◆ setup_tree_matrix()

◆ unset_nonvint_block()

◆ update()

◆ verify_structure()

Variable Documentation

◆ _upd

◆ batch_file

◆ batch_n

◆ batch_size

◆ batch_var

◆ cvode_active_

◆ diam_changed

◆ dt

◆ hoc_epsilon

◆ nonvint_block_list

◆ nrn_allthread_handle

◆ nrn_mech_wtime_

◆ nrn_multisplit_setup_

◆ nrn_use_fast_imem

◆ nrnmpi_v_transfer_