nrnpy_hoc.cpp File Reference

#include <nrnpython.h>
#include <structmember.h>
#include <InterViews/resource.h>
#include <nrnoc2iv.h>
#include <ocjump.h>
#include "ivocvect.h"
#include "oclist.h"
#include "ocfile.h"
#include <cstdint>
#include "nrniv_mf.h"
#include "nrnpy_utils.h"
#include "../nrniv/shapeplt.h"
#include <vector>
#include "nrnwrap_dlfcn.h"
#include "parse.hpp"
#include <hoccontext.h>
#include "nrnpy_hoc.h"

Go to the source code of this file.

Classes
struct	NPySecObj
struct	PyHocObject

Macros
#define	BYTEHEADER
#define	BYTESWAP(_X__, _TYPE__)

Functions
void	lvappendsec_and_ref (void *sl, Section *sec)
Section *	nrn_noerr_access ()
void	hoc_pushs (Symbol *)
double *	hoc_evalpointer ()
double	cable_prop_eval (Symbol *sym)
void	nrn_change_nseg (Section *, int)
void	hoc_push_string ()
char **	hoc_strpop ()
void	hoc_objectvar ()
Object *	hoc_newobj1 (Symbol *, int)
int	ivoc_list_count (Object *)
Object **	hoc_objpop ()
Object *	hoc_obj_look_inside_stack (int)
void	hoc_object_component ()
int	hoc_stack_type ()
void	hoc_call ()
void	hoc_tobj_unref (Object **)
void	hoc_unref_defer ()
void	sec_access_push ()
PyObject *	nrnpy_pushsec (PyObject *)
bool	hoc_valid_stmt (const char *, Object *)
PyObject *	nrnpy_nrn ()
PyObject *	nrnpy_cas (PyObject *, PyObject *)
PyObject *	nrnpy_forall (PyObject *, PyObject *)
PyObject *	nrnpy_newsecobj (PyObject *, PyObject *, PyObject *)
int	nrn_secref_nchild (Section *)
PyObject *	nrnpy_hoc2pyobject (Object *)
PyObject *	nrnpy_ho2po (Object *)
Object *	nrnpy_po2ho (PyObject *)
Object *	nrnpy_pyobject_in_obj (PyObject *)
static void	pyobject_in_objptr (Object **, PyObject *)
int	nrnpy_set_vec_as_numpy (PyObject *(*p)(int, double *))
int	nrnpy_set_gui_callback (PyObject *)
double **	nrnpy_setpointer_helper (PyObject *, PyObject *)
Symbol *	ivoc_alias_lookup (const char *name, Object *ob)
int	nrn_netcon_weight (NetCon *, double **)
int	nrn_matrix_dim (void *, int)
NPySecObj *	newpysechelp (Section *sec)
static void	add2topdict (PyObject *)
static PyObject *	cpp2refstr (char **cpp)
static PyObject *	hocobj_call (PyHocObject *self, PyObject *args, PyObject *kwrds)
static PyObject *	nrnexec (PyObject *self, PyObject *args)
static PyObject *	hoc_ac (PyObject *self, PyObject *args)
static void	hocobj_dealloc (PyHocObject *self)
static PyObject *	hocobj_new (PyTypeObject *subtype, PyObject *args, PyObject *kwds)
static int	hocobj_init (PyObject *subself, PyObject *args, PyObject *kwds)
static PyObject *	hocobj_name (PyObject *pself, PyObject *args)
static PyObject *	hocobj_repr (PyObject *p)
static Inst *	save_pc (Inst *newpc)
static int	hocobj_pushargs (PyObject *args, std::vector< char * > &s2free)
static void	hocobj_pushargs_free_strings (std::vector< char * > &s2free)
static Symbol *	getsym (char *name, Object *ho, int fail)
static int	component (PyHocObject *po)
int	nrnpy_numbercheck (PyObject *po)
PyObject *	nrnpy_hoc_pop ()
static int	set_final_from_stk (PyObject *po)
static void *	nrnpy_hoc_int_pop ()
static void *	nrnpy_hoc_bool_pop ()
static void *	fcall (void *vself, void *vargs)
PyObject *	hocobj_call_arg (int i)
static Arrayinfo *	hocobj_aray (Symbol *sym, Object *ho)
static PyHocObject *	intermediate (PyHocObject *po, Symbol *sym, int ix)
static void	hocobj_pushtop (PyHocObject *po, Symbol *sym, int ix)
static void	hocobj_objectvar (Symbol *sym)
static PyObject *	hocobj_getsec (Symbol *sym)
static void	eval_component (PyHocObject *po, int ix)
PyObject *	nrn_hocobj_ptr (double *pd)
int	nrn_is_hocobj_ptr (PyObject *po, double *&pd)
static void	symlist2dict (Symlist *sl, PyObject *dict)
static int	setup_doc_system ()
PyObject *	toplevel_get (PyObject *subself, const char *n)
static PyObject *	hocobj_getattr (PyObject *subself, PyObject *pyname)
static PyObject *	hocobj_baseattr (PyObject *subself, PyObject *args)
static PyObject *	hocobj_getattro (PyObject *subself, PyObject *name)
static int	hocobj_setattro (PyObject *subself, PyObject *pyname, PyObject *value)
static int	araylen (Arrayinfo *a, PyHocObject *po)
static int	araychk (Arrayinfo *a, PyHocObject *po, int ix)
static Py_ssize_t	hocobj_len (PyObject *self)
static int	hocobj_nonzero (PyObject *self)
static PyObject *	hocobj_iter (PyObject *self)
static hoc_Item *	next_valid_secitem (hoc_Item *q, hoc_Item *ql)
static PyObject *	iternext_sl (PyHocObject *po, hoc_Item *ql)
static PyObject *	hocobj_iternext (PyObject *self)
static PyObject *	hocobj_getitem (PyObject *self, Py_ssize_t ix)
static int	hocobj_setitem (PyObject *self, Py_ssize_t i, PyObject *arg)
static PyObject *	mkref (PyObject *self, PyObject *args)
static PyObject *	setpointer (PyObject *self, PyObject *args)
static PyObject *	hocobj_vptr (PyObject *pself, PyObject *args)
static long	hocobj_hash (PyHocObject *self)
PyObject *	nrn_ptr_richcmp (void *self_ptr, void *other_ptr, int op)
static PyObject *	hocobj_richcmp (PyHocObject *self, PyObject *other, int op)
static PyObject *	hocobj_same (PyHocObject *pself, PyObject *args)
static char *	double_array_interface (PyObject *po, long &stride)
static IvocVect *	nrnpy_vec_from_python (void *v)
static void	nrnpy_store_savestate_ (char **save_data, uint64_t *save_data_size)
static void	nrnpy_restore_savestate_ (int64_t size, char *data)
int	nrnpy_set_toplevel_callbacks (PyObject *rvp_plot0, PyObject *plotshape_plot0, PyObject *get_mech_object_0, PyObject *store_savestate, PyObject *restore_savestate)
static double	object_to_double_ (Object *obj)
static void *	nrnpy_get_pyobj_ (Object *obj)
static void	nrnpy_decref_ (void *pyobj)
static PyObject *	gui_helper_3_helper_ (const char *name, Object *obj, int handle_strptr)
static Object **	gui_helper_3_ (const char *name, Object *obj, int handle_strptr)
static char **	gui_helper_3_str_ (const char *name, Object *obj, int handle_strptr)
static Object **	gui_helper_ (const char *name, Object *obj)
static Object **	vec_as_numpy_helper (int size, double *data)
static Object **	nrnpy_vec_to_python (void *v)
static Object *	rvp_rxd_to_callable_ (Object *obj)
PyObject *	get_plotshape_data (PyObject *sp)
static PyObject *	hocpickle_reduce (PyObject *self, PyObject *args)
static PyObject *	hocpickle_setstate (PyObject *self, PyObject *args)
static PyObject *	libpython_path (PyObject *self, PyObject *args)
int	nrnpy_vec_math_register (PyObject *callback)
int	nrnpy_rvp_pyobj_callback_register (PyObject *callback)
static bool	pyobj_is_vector (PyObject *obj)
static PyObject *	py_hocobj_math (const char *op, PyObject *obj1, PyObject *obj2)
static PyObject *	py_hocobj_math_unary (const char *op, PyObject *obj)
static PyObject *	py_hocobj_add (PyObject *obj1, PyObject *obj2)
static PyObject *	py_hocobj_uabs (PyObject *obj)
static PyObject *	py_hocobj_uneg (PyObject *obj)
static PyObject *	py_hocobj_upos (PyObject *obj)
static PyObject *	py_hocobj_sub (PyObject *obj1, PyObject *obj2)
static PyObject *	py_hocobj_mul (PyObject *obj1, PyObject *obj2)
static PyObject *	py_hocobj_div (PyObject *obj1, PyObject *obj2)
char	get_endian_character ()
static void	sectionlist_helper_ (void *sl, Object *args)
static int	get_nrncore_opt_value (const char *option)
static int	nrncore_enable_value ()
	return value of neuron.coreneuron.enable More...
static int	nrncore_file_mode_value ()
	return value of neuron.coreneuron.file_mode More...
static char *	nrncore_arg (double tstop)
PyObject *	nrnpy_hoc ()

Variables
PyTypeObject *	psection_type
void(*	nrnpy_sectionlist_helper_ )(void *, Object *)
Object **(*	nrnpy_gui_helper_ )(const char *, Object *)
	HAVE_IV. More...
Object **(*	nrnpy_gui_helper3_ )(const char *, Object *, int)
char **(*	nrnpy_gui_helper3_str_ )(const char *, Object *, int)
double(*	nrnpy_object_to_double_ )(Object *)
void *(*	nrnpy_get_pyobj )(Object *obj)
void(*	nrnpy_restore_savestate )(int64_t, char *)
void(*	nrnpy_store_savestate )(char **save_data, uint64_t *save_data_size)
void(*	nrnpy_decref )(void *pyobj)
Symlist *	hoc_top_level_symlist
Symlist *	hoc_built_in_symlist
Inst *	hoc_pc
int	nrn_inpython_
Objectdata *	hoc_top_level_data
int	section_object_seen
Symbol *	nrnpy_pyobj_sym_
Symbol *	nrn_child_sym
IvocVect *(*	nrnpy_vec_from_python_p_ )(void *)
Object **(*	nrnpy_vec_to_python_p_ )(void *)
Object **(*	nrnpy_vec_as_numpy_helper_ )(int, double *)
Object *(*	nrnpy_rvp_rxd_to_callable )(Object *)
PyObject *	pmech_types
PyObject *	rangevars_
int	hoc_max_builtin_class_id
int	hoc_return_type_code
static cTemplate *	hoc_vec_template_
static cTemplate *	hoc_list_template_
static cTemplate *	hoc_sectionlist_template_
static char	array_interface_typestr [5] = "|f8"
static PyObject *	pfunc_get_docstring = NULL
static PyObject *	topmethdict = NULL
static const char *	hocobj_docstring = "class neuron.hoc.HocObject - Hoc Object wrapper"
static PyObject *	rvp_plot = NULL
static PyObject *	plotshape_plot = NULL
static PyObject *	get_mech_object_ = NULL
static PyObject *	nrnpy_rvp_pyobj_callback = NULL
PyTypeObject *	hocobject_type
static PyMethodDef	HocMethods []
static PyObject *	curargs_
static int	refuse_to_look
static Symbol *	sym_vec_x
static Symbol *	sym_mat_x
static Symbol *	sym_netcon_weight
static PyObject *(*	vec_as_numpy )(int, double *)
static PyObject *	store_savestate_ = NULL
static PyObject *	restore_savestate_ = NULL
static PyObject *	gui_callback = NULL
static PyMethodDef	hocobj_methods []
static PyMethodDef	toplevel_methods []
static PyObject *	nrnpy_vec_math = NULL
static PyMemberDef	hocobj_members [] = {{NULL, 0, 0, 0, NULL}}
int(*	nrnpy_nrncore_enable_value_p_ )()
	value of neuron.coreneuron.enable as 0, 1 (-1 if error) More...
int(*	nrnpy_nrncore_file_mode_value_p_ )()
	value of neuron.coreneuron.file_mode as 0, 1 (-1 if error) More...
char *(*	nrnpy_nrncore_arg_p_ )(double tstop)
	Gets the python string returned by neuron.coreneuron.nrncore_arg(tstop) return a strdup() copy of the string which should be free when the caller finishes with it. More...

Macro Definition Documentation

BYTEHEADER

#define BYTEHEADER

Value:

    uint32_t _II__;  \
    char* _IN__;     \
    char _OUT__[16]; \
    int BYTESWAP_FLAG = 0;

Definition at line 2707 of file nrnpy_hoc.cpp.

BYTESWAP

#define BYTESWAP	(		_X__,
			_TYPE__
	)

Value:

    if (BYTESWAP_FLAG == 1) {                                   \
        _IN__ = (char*) &(_X__);                                \
        for (_II__ = 0; _II__ < sizeof(_TYPE__); _II__++) {     \
            _OUT__[_II__] = _IN__[sizeof(_TYPE__) - _II__ - 1]; \
        }                                                       \
        (_X__) = *((_TYPE__*) &_OUT__);                         \
    }

Definition at line 2712 of file nrnpy_hoc.cpp.

Function Documentation

add2topdict()

static void add2topdict ( PyObject *  dict )

static

Definition at line 2833 of file nrnpy_hoc.cpp.

araychk()

static int araychk ( Arrayinfo *  a, PyHocObject *  po, int  ix  )

static

Definition at line 1524 of file nrnpy_hoc.cpp.

araylen()

static int araylen ( Arrayinfo *  a, PyHocObject *  po  )

static

Definition at line 1503 of file nrnpy_hoc.cpp.

cable_prop_eval()

double cable_prop_eval

(

Symbol *

sym

)

Definition at line 1518 of file cabcode.cpp.

component()

static int component ( PyHocObject *  po )

static

Definition at line 445 of file nrnpy_hoc.cpp.

cpp2refstr()

static PyObject * cpp2refstr ( char **  cpp )

static

Definition at line 2022 of file nrnpy_hoc.cpp.

double_array_interface()

static char* double_array_interface ( PyObject *  po, long &  stride  )

static

Definition at line 2226 of file nrnpy_hoc.cpp.

eval_component()

static void eval_component ( PyHocObject *  po, int  ix  )

static

Definition at line 862 of file nrnpy_hoc.cpp.

fcall()

static void* fcall ( void *  vself, void *  vargs  )

static

Definition at line 643 of file nrnpy_hoc.cpp.

get_endian_character()

char get_endian_character

(

)

Definition at line 2932 of file nrnpy_hoc.cpp.

get_nrncore_opt_value()

static int get_nrncore_opt_value ( const char *  option )

static

Definition at line 3006 of file nrnpy_hoc.cpp.

get_plotshape_data()

PyObject* get_plotshape_data

(

PyObject *

sp

)

Definition at line 2616 of file nrnpy_hoc.cpp.

getsym()

static Symbol* getsym ( char *  name, Object *  ho, int  fail  )

static

Definition at line 416 of file nrnpy_hoc.cpp.

gui_helper_()

static Object** gui_helper_ ( const char *  name, Object *  obj  )

static

Definition at line 2519 of file nrnpy_hoc.cpp.

gui_helper_3_()

static Object** gui_helper_3_ ( const char *  name, Object *  obj, int  handle_strptr  )

static

Definition at line 2491 of file nrnpy_hoc.cpp.

gui_helper_3_helper_()

static PyObject* gui_helper_3_helper_ ( const char *  name, Object *  obj, int  handle_strptr  )

static

Definition at line 2424 of file nrnpy_hoc.cpp.

gui_helper_3_str_()

static char** gui_helper_3_str_ ( const char *  name, Object *  obj, int  handle_strptr  )

static

Definition at line 2505 of file nrnpy_hoc.cpp.

hoc_ac()

static PyObject* hoc_ac ( PyObject *  self, PyObject *  args  )

static

Definition at line 171 of file nrnpy_hoc.cpp.

hoc_call()

void hoc_call

(

)

hoc_evalpointer()

double* hoc_evalpointer

(

)

Definition at line 1909 of file code.cpp.

hoc_newobj1()

Object* hoc_newobj1	(	Symbol *	sym,
		int	narg
	)

Definition at line 565 of file hoc_oop.cpp.

hoc_obj_look_inside_stack()

Object* hoc_obj_look_inside_stack

(

int

i

)

Definition at line 770 of file code.cpp.

hoc_object_component()

void hoc_object_component

(

)

Definition at line 999 of file hoc_oop.cpp.

hoc_objectvar()

void hoc_objectvar

(

)

Definition at line 855 of file hoc_oop.cpp.

hoc_objpop()

Object** hoc_objpop

(

)

Definition at line 860 of file code.cpp.

hoc_push_string()

void hoc_push_string

(

)

Definition at line 685 of file code.cpp.

hoc_pushs()

void hoc_pushs

(

Symbol *

)

hoc_stack_type()

int hoc_stack_type

(

)

Definition at line 654 of file code.cpp.

hoc_strpop()

char** hoc_strpop

(

)

Definition at line 879 of file code.cpp.

hoc_tobj_unref()

void hoc_tobj_unref

(

Object **

p

)

Definition at line 226 of file code.cpp.

hoc_unref_defer()

void hoc_unref_defer

(

)

Definition at line 247 of file code.cpp.

hoc_valid_stmt()

bool hoc_valid_stmt	(	const char *	stmt,
		Object *	ob
	)

Definition at line 35 of file ocjump.cpp.

hocobj_aray()

static Arrayinfo* hocobj_aray ( Symbol *  sym, Object *  ho  )

static

Definition at line 780 of file nrnpy_hoc.cpp.

hocobj_baseattr()

static PyObject* hocobj_baseattr ( PyObject *  subself, PyObject *  args  )

static

Definition at line 1283 of file nrnpy_hoc.cpp.

hocobj_call()

static PyObject * hocobj_call ( PyHocObject *  self, PyObject *  args, PyObject *  kwrds  )

static

Definition at line 704 of file nrnpy_hoc.cpp.

hocobj_call_arg()

PyObject* hocobj_call_arg

(

int

i

)

Definition at line 700 of file nrnpy_hoc.cpp.

hocobj_dealloc()

static void hocobj_dealloc ( PyHocObject *  self )

static

Definition at line 181 of file nrnpy_hoc.cpp.

hocobj_getattr()

static PyObject* hocobj_getattr ( PyObject *  subself, PyObject *  pyname  )

static

Definition at line 944 of file nrnpy_hoc.cpp.

hocobj_getattro()

static PyObject* hocobj_getattro ( PyObject *  subself, PyObject *  name  )

static

Definition at line 1292 of file nrnpy_hoc.cpp.

hocobj_getitem()

static PyObject* hocobj_getitem ( PyObject *  self, Py_ssize_t  ix  )

static

Definition at line 1765 of file nrnpy_hoc.cpp.

hocobj_getsec()

static PyObject* hocobj_getsec ( Symbol *  sym )

static

Definition at line 850 of file nrnpy_hoc.cpp.

hocobj_hash()

static long hocobj_hash ( PyHocObject *  self )

static

Definition at line 2103 of file nrnpy_hoc.cpp.

hocobj_init()

static int hocobj_init ( PyObject *  subself, PyObject *  args, PyObject *  kwds  )

static

Definition at line 256 of file nrnpy_hoc.cpp.

hocobj_iter()

static PyObject* hocobj_iter ( PyObject *  self )

static

Definition at line 1596 of file nrnpy_hoc.cpp.

hocobj_iternext()

static PyObject* hocobj_iternext ( PyObject *  self )

static

Definition at line 1740 of file nrnpy_hoc.cpp.

hocobj_len()

static Py_ssize_t hocobj_len ( PyObject *  self )

static

Definition at line 1541 of file nrnpy_hoc.cpp.

hocobj_name()

static PyObject* hocobj_name ( PyObject *  pself, PyObject *  args  )

static

Definition at line 282 of file nrnpy_hoc.cpp.

hocobj_new()

static PyObject* hocobj_new ( PyTypeObject *  subtype, PyObject *  args, PyObject *  kwds  )

static

Definition at line 207 of file nrnpy_hoc.cpp.

hocobj_nonzero()

static int hocobj_nonzero ( PyObject *  self )

static

Definition at line 1568 of file nrnpy_hoc.cpp.

hocobj_objectvar()

static void hocobj_objectvar ( Symbol *  sym )

static

Definition at line 842 of file nrnpy_hoc.cpp.

hocobj_pushargs()

static int hocobj_pushargs ( PyObject *  args, std::vector< char * > &  s2free  )

static

Definition at line 337 of file nrnpy_hoc.cpp.

hocobj_pushargs_free_strings()

static void hocobj_pushargs_free_strings ( std::vector< char * > &  s2free )

static

Definition at line 406 of file nrnpy_hoc.cpp.

hocobj_pushtop()

static void hocobj_pushtop ( PyHocObject *  po, Symbol *  sym, int  ix  )

static

Definition at line 827 of file nrnpy_hoc.cpp.

hocobj_repr()

static PyObject* hocobj_repr ( PyObject *  p )

static

Definition at line 327 of file nrnpy_hoc.cpp.

hocobj_richcmp()

static PyObject* hocobj_richcmp ( PyHocObject *  self, PyObject *  other, int  op  )

static

Definition at line 2136 of file nrnpy_hoc.cpp.

hocobj_same()

static PyObject* hocobj_same ( PyHocObject *  pself, PyObject *  args  )

static

Definition at line 2213 of file nrnpy_hoc.cpp.

hocobj_setattro()

static int hocobj_setattro ( PyObject *  subself, PyObject *  pyname, PyObject *  value  )

static

Definition at line 1310 of file nrnpy_hoc.cpp.

hocobj_setitem()

static int hocobj_setitem ( PyObject *  self, Py_ssize_t  i, PyObject *  arg  )

static

Definition at line 1890 of file nrnpy_hoc.cpp.

hocobj_vptr()

static PyObject* hocobj_vptr ( PyObject *  pself, PyObject *  args  )

static

Definition at line 2091 of file nrnpy_hoc.cpp.

hocpickle_reduce()

static PyObject* hocpickle_reduce ( PyObject *  self, PyObject *  args  )

static

Definition at line 2647 of file nrnpy_hoc.cpp.

hocpickle_setstate()

static PyObject* hocpickle_setstate ( PyObject *  self, PyObject *  args  )

static

Definition at line 2721 of file nrnpy_hoc.cpp.

intermediate()

static PyHocObject* intermediate ( PyHocObject *  po, Symbol *  sym, int  ix  )

static

Definition at line 801 of file nrnpy_hoc.cpp.

iternext_sl()

static PyObject* iternext_sl ( PyHocObject *  po, hoc_Item *  ql  )

static

Definition at line 1644 of file nrnpy_hoc.cpp.

ivoc_alias_lookup()

Symbol* ivoc_alias_lookup	(	const char *	name,
		Object *	ob
	)

Definition at line 104 of file strfun.cpp.

ivoc_list_count()

int ivoc_list_count

(

Object *

olist

)

Definition at line 408 of file oclist.cpp.

libpython_path()

static PyObject* libpython_path ( PyObject *  self, PyObject *  args  )

static

Definition at line 2783 of file nrnpy_hoc.cpp.

lvappendsec_and_ref()

void lvappendsec_and_ref	(	void *	sl,
		Section *	sec
	)

Definition at line 25 of file seclist.cpp.

mkref()

static PyObject* mkref ( PyObject *  self, PyObject *  args  )

static

Definition at line 1991 of file nrnpy_hoc.cpp.

newpysechelp()

NPySecObj * newpysechelp

(

Section *

sec

)

Definition at line 865 of file nrnpy_nrn.cpp.

next_valid_secitem()

static hoc_Item* next_valid_secitem ( hoc_Item *  q, hoc_Item *  ql  )

static

Definition at line 1629 of file nrnpy_hoc.cpp.

nrn_change_nseg()

void nrn_change_nseg	(	Section *	sec,
		int	n
	)

Definition at line 1557 of file cabcode.cpp.

nrn_hocobj_ptr()

PyObject* nrn_hocobj_ptr

(

double *

pd

)

Definition at line 870 of file nrnpy_hoc.cpp.

nrn_is_hocobj_ptr()

int nrn_is_hocobj_ptr	(	PyObject *	po,
		double *&	pd
	)

Definition at line 878 of file nrnpy_hoc.cpp.

nrn_matrix_dim()

int nrn_matrix_dim	(	void *	vm,
		int	d
	)

Definition at line 27 of file ocmatrix.cpp.

nrn_netcon_weight()

int nrn_netcon_weight	(	NetCon *	nc,
		double **	pw
	)

Definition at line 160 of file netcvode.cpp.

nrn_noerr_access()

Section* nrn_noerr_access

(

)

Definition at line 472 of file cabcode.cpp.

nrn_ptr_richcmp()

PyObject* nrn_ptr_richcmp	(	void *	self_ptr,
		void *	other_ptr,
		int	op
	)

Definition at line 2107 of file nrnpy_hoc.cpp.

nrn_secref_nchild()

int nrn_secref_nchild

(

Section *

sec

)

Definition at line 226 of file secref.cpp.

nrncore_arg()

static char* nrncore_arg ( double  tstop )

static

Definition at line 3044 of file nrnpy_hoc.cpp.

nrncore_enable_value()

static int nrncore_enable_value ( )

static

return value of neuron.coreneuron.enable

Definition at line 3029 of file nrnpy_hoc.cpp.

nrncore_file_mode_value()

static int nrncore_file_mode_value ( )

static

return value of neuron.coreneuron.file_mode

Definition at line 3034 of file nrnpy_hoc.cpp.

nrnexec()

static PyObject* nrnexec ( PyObject *  self, PyObject *  args  )

static

Definition at line 162 of file nrnpy_hoc.cpp.

nrnpy_cas()

PyObject* nrnpy_cas	(	PyObject *	self,
		PyObject *	args
	)

Definition at line 2448 of file nrnpy_nrn.cpp.

nrnpy_decref_()

static void nrnpy_decref_ ( void *  pyobj )

static

Definition at line 2417 of file nrnpy_hoc.cpp.

nrnpy_forall()

PyObject * nrnpy_forall	(	PyObject *	self,
		PyObject *	args
	)

Definition at line 1587 of file nrnpy_hoc.cpp.

nrnpy_get_pyobj_()

static void* nrnpy_get_pyobj_ ( Object *  obj )

static

Definition at line 2409 of file nrnpy_hoc.cpp.

nrnpy_ho2po()

PyObject* nrnpy_ho2po

(

Object *

o

)

Definition at line 499 of file nrnpy_hoc.cpp.

nrnpy_hoc()

PyObject* nrnpy_hoc

(

)

Definition at line 3078 of file nrnpy_hoc.cpp.

nrnpy_hoc2pyobject()

PyObject * nrnpy_hoc2pyobject

(

Object *

ho

)

Definition at line 196 of file nrnpy_p2h.cpp.

nrnpy_hoc_bool_pop()

static void* nrnpy_hoc_bool_pop ( )

static

Definition at line 639 of file nrnpy_hoc.cpp.

nrnpy_hoc_int_pop()

static void* nrnpy_hoc_int_pop ( )

static

Definition at line 635 of file nrnpy_hoc.cpp.

nrnpy_hoc_pop()

PyObject* nrnpy_hoc_pop

(

)

Definition at line 547 of file nrnpy_hoc.cpp.

nrnpy_newsecobj()

PyObject* nrnpy_newsecobj	(	PyObject *	self,
		PyObject *	args,
		PyObject *	kwds
	)

Definition at line 373 of file nrnpy_nrn.cpp.

nrnpy_nrn()

PyObject* nrnpy_nrn

(

)

Definition at line 2481 of file nrnpy_nrn.cpp.

nrnpy_numbercheck()

int nrnpy_numbercheck

(

PyObject *

po

)

Definition at line 474 of file nrnpy_hoc.cpp.

nrnpy_po2ho()

Object* nrnpy_po2ho

(

PyObject *

po

)

Definition at line 520 of file nrnpy_hoc.cpp.

nrnpy_pushsec()

PyObject* nrnpy_pushsec

(

PyObject *

sec

)

Definition at line 1263 of file nrnpy_nrn.cpp.

nrnpy_pyobject_in_obj()

Object * nrnpy_pyobject_in_obj

(

PyObject *

po

)

Definition at line 210 of file nrnpy_p2h.cpp.

nrnpy_restore_savestate_()

static void nrnpy_restore_savestate_ ( int64_t  size, char *  data  )

static

Definition at line 2358 of file nrnpy_hoc.cpp.

nrnpy_rvp_pyobj_callback_register()

int nrnpy_rvp_pyobj_callback_register

(

PyObject *

callback

)

Definition at line 2855 of file nrnpy_hoc.cpp.

nrnpy_set_gui_callback()

int nrnpy_set_gui_callback

(

PyObject *

new_gui_callback

)

Definition at line 2396 of file nrnpy_hoc.cpp.

nrnpy_set_toplevel_callbacks()

int nrnpy_set_toplevel_callbacks	(	PyObject *	rvp_plot0,
		PyObject *	plotshape_plot0,
		PyObject *	get_mech_object_0,
		PyObject *	store_savestate,
		PyObject *	restore_savestate
	)

Definition at line 2380 of file nrnpy_hoc.cpp.

nrnpy_set_vec_as_numpy()

int nrnpy_set_vec_as_numpy

(

PyObject *(*)(int, double *)

p

)

Definition at line 2326 of file nrnpy_hoc.cpp.

nrnpy_setpointer_helper()

double** nrnpy_setpointer_helper	(	PyObject *	pyname,
		PyObject *	mech
	)

Definition at line 2141 of file nrnpy_nrn.cpp.

nrnpy_store_savestate_()

static void nrnpy_store_savestate_ ( char **  save_data, uint64_t *  save_data_size  )

static

Definition at line 2335 of file nrnpy_hoc.cpp.

nrnpy_vec_from_python()

static IvocVect* nrnpy_vec_from_python ( void *  v )

static

Definition at line 2268 of file nrnpy_hoc.cpp.

nrnpy_vec_math_register()

int nrnpy_vec_math_register

(

PyObject *

callback

)

Definition at line 2850 of file nrnpy_hoc.cpp.

nrnpy_vec_to_python()

static Object** nrnpy_vec_to_python ( void *  v )

static

Definition at line 2537 of file nrnpy_hoc.cpp.

object_to_double_()

static double object_to_double_ ( Object *  obj )

static

Definition at line 2401 of file nrnpy_hoc.cpp.

py_hocobj_add()

static PyObject* py_hocobj_add ( PyObject *  obj1, PyObject *  obj2  )

static

Definition at line 2899 of file nrnpy_hoc.cpp.

py_hocobj_div()

static PyObject* py_hocobj_div ( PyObject *  obj1, PyObject *  obj2  )

static

Definition at line 2923 of file nrnpy_hoc.cpp.

py_hocobj_math()

static PyObject* py_hocobj_math ( const char *  op, PyObject *  obj1, PyObject *  obj2  )

static

Definition at line 2873 of file nrnpy_hoc.cpp.

py_hocobj_math_unary()

static PyObject* py_hocobj_math_unary ( const char *  op, PyObject *  obj  )

static

Definition at line 2890 of file nrnpy_hoc.cpp.

py_hocobj_mul()

static PyObject* py_hocobj_mul ( PyObject *  obj1, PyObject *  obj2  )

static

Definition at line 2919 of file nrnpy_hoc.cpp.

py_hocobj_sub()

static PyObject* py_hocobj_sub ( PyObject *  obj1, PyObject *  obj2  )

static

Definition at line 2915 of file nrnpy_hoc.cpp.

py_hocobj_uabs()

static PyObject* py_hocobj_uabs ( PyObject *  obj )

static

Definition at line 2903 of file nrnpy_hoc.cpp.

py_hocobj_uneg()

static PyObject* py_hocobj_uneg ( PyObject *  obj )

static

Definition at line 2907 of file nrnpy_hoc.cpp.

py_hocobj_upos()

static PyObject* py_hocobj_upos ( PyObject *  obj )

static

Definition at line 2911 of file nrnpy_hoc.cpp.

pyobj_is_vector()

static bool pyobj_is_vector ( PyObject *  obj )

static

Definition at line 2860 of file nrnpy_hoc.cpp.

pyobject_in_objptr()

static void pyobject_in_objptr ( Object **  op, PyObject *  po  )

static

Definition at line 274 of file nrnpy_hoc.cpp.

rvp_rxd_to_callable_()

static Object* rvp_rxd_to_callable_ ( Object *  obj )

static

Definition at line 2602 of file nrnpy_hoc.cpp.

save_pc()

static Inst* save_pc ( Inst *  newpc )

static

Definition at line 331 of file nrnpy_hoc.cpp.

sec_access_push()

void sec_access_push

(

)

Definition at line 747 of file cabcode.cpp.

sectionlist_helper_()

static void sectionlist_helper_ ( void *  sl, Object *  args  )

static

Definition at line 2963 of file nrnpy_hoc.cpp.

set_final_from_stk()

static int set_final_from_stk ( PyObject *  po )

static

Definition at line 582 of file nrnpy_hoc.cpp.

setpointer()

static PyObject* setpointer ( PyObject *  self, PyObject *  args  )

static

Definition at line 2043 of file nrnpy_hoc.cpp.

setup_doc_system()

static int setup_doc_system ( )

static

Definition at line 907 of file nrnpy_hoc.cpp.

symlist2dict()

static void symlist2dict ( Symlist *  sl, PyObject *  dict  )

static

Definition at line 890 of file nrnpy_hoc.cpp.

toplevel_get()

PyObject* toplevel_get	(	PyObject *	subself,
		const char *	n
	)

Definition at line 927 of file nrnpy_hoc.cpp.

vec_as_numpy_helper()

static Object** vec_as_numpy_helper ( int  size, double *  data  )

static

Definition at line 2523 of file nrnpy_hoc.cpp.

Variable Documentation

array_interface_typestr

char array_interface_typestr[5] = "|f8"

static

Definition at line 110 of file nrnpy_hoc.cpp.

curargs_

PyObject* curargs_

static

Definition at line 698 of file nrnpy_hoc.cpp.

get_mech_object_

PyObject* get_mech_object_ = NULL

static

Definition at line 156 of file nrnpy_hoc.cpp.

gui_callback

PyObject* gui_callback = NULL

static

Definition at line 2395 of file nrnpy_hoc.cpp.

hoc_built_in_symlist

Symlist* hoc_built_in_symlist

extern

Definition at line 76 of file ivocmac.cpp.

hoc_list_template_

cTemplate* hoc_list_template_

static

Definition at line 101 of file nrnpy_hoc.cpp.

hoc_max_builtin_class_id

int hoc_max_builtin_class_id

extern

Definition at line 40 of file hoc_oop.cpp.

hoc_pc

Inst* hoc_pc

extern

hoc_return_type_code

int hoc_return_type_code

extern

Definition at line 42 of file code.cpp.

hoc_sectionlist_template_

cTemplate* hoc_sectionlist_template_

static

Definition at line 102 of file nrnpy_hoc.cpp.

hoc_top_level_data

Objectdata* hoc_top_level_data

extern

Definition at line 124 of file hoc_oop.cpp.

hoc_top_level_symlist

Symlist* hoc_top_level_symlist

extern

Definition at line 23 of file symdir.cpp.

hoc_vec_template_

cTemplate* hoc_vec_template_

static

Definition at line 100 of file nrnpy_hoc.cpp.

HocMethods

PyMethodDef HocMethods[]

static

Initial value:

= {
    {"execute", nrnexec, METH_VARARGS, "Execute a hoc command, return 1 on success, 0 on failure."},
    {"hoc_ac", hoc_ac, METH_VARARGS, "Get (or set) the scalar hoc_ac_."},
    {NULL, NULL, 0, NULL}}

Definition at line 176 of file nrnpy_hoc.cpp.

hocobj_docstring

const char* hocobj_docstring = "class neuron.hoc.HocObject - Hoc Object wrapper"

static

Definition at line 122 of file nrnpy_hoc.cpp.

hocobj_members

PyMemberDef hocobj_members[] = {{NULL, 0, 0, 0, NULL}}

static

Definition at line 2926 of file nrnpy_hoc.cpp.

hocobj_methods

PyMethodDef hocobj_methods[]

static

Initial value:

= {
    {"baseattr", hocobj_baseattr, METH_VARARGS, "To allow use of an overrided base method"},
    {"hocobjptr", hocobj_vptr, METH_NOARGS, "Hoc Object pointer as a long int"},
    {"same",
     (PyCFunction) hocobj_same,
     METH_VARARGS,
     "o1.same(o2) return True if o1 and o2 wrap the same internal HOC Object"},
    {"hname", hocobj_name, METH_NOARGS, "More specific than __str__() or __attr__()."},
    {"__reduce__", hocpickle_reduce, METH_VARARGS, "pickle interface"},
    {"__setstate__", hocpickle_setstate, METH_VARARGS, "pickle interface"},
    {NULL, NULL, 0, NULL}}

Definition at line 2805 of file nrnpy_hoc.cpp.

hocobject_type

PyTypeObject* hocobject_type

Definition at line 159 of file nrnpy_hoc.cpp.

nrn_child_sym

Symbol* nrn_child_sym

extern

Definition at line 27 of file secref.cpp.

nrn_inpython_

int nrn_inpython_

extern

Definition at line 37 of file hoc.cpp.

nrnpy_decref

void(* nrnpy_decref) (void *pyobj) ( void *  pyobj )

extern

Definition at line 47 of file shapeplt.cpp.

nrnpy_get_pyobj

void*(* nrnpy_get_pyobj) (Object *obj) ( Object *  obj )

extern

Definition at line 46 of file shapeplt.cpp.

nrnpy_gui_helper3_

Object**(* nrnpy_gui_helper3_) (const char *, Object *, int) ( const char *  name, Object *  obj, int  handle_strptr  )

extern

Definition at line 15 of file xmenu.cpp.

nrnpy_gui_helper3_str_

char**(* nrnpy_gui_helper3_str_) (const char *, Object *, int) ( const char *  name, Object *  obj, int  handle_strptr  )

extern

Definition at line 16 of file xmenu.cpp.

nrnpy_gui_helper_

Object**(* nrnpy_gui_helper_) (const char *, Object *) ( const char *  name, Object *  obj  )

extern

HAVE_IV.

Definition at line 13 of file xmenu.cpp.

nrnpy_nrncore_arg_p_

char*(* nrnpy_nrncore_arg_p_) (double tstop) ( double  tstop )

extern

Gets the python string returned by neuron.coreneuron.nrncore_arg(tstop) return a strdup() copy of the string which should be free when the caller finishes with it.

Return NULL if error or bool(neuron.coreneuron.enable) is False.

Definition at line 129 of file nrncore_write.cpp.

nrnpy_nrncore_enable_value_p_

int(* nrnpy_nrncore_enable_value_p_) () ( )

extern

value of neuron.coreneuron.enable as 0, 1 (-1 if error)

Definition at line 126 of file nrncore_write.cpp.

nrnpy_nrncore_file_mode_value_p_

int(* nrnpy_nrncore_file_mode_value_p_) () ( )

extern

value of neuron.coreneuron.file_mode as 0, 1 (-1 if error)

Definition at line 127 of file nrncore_write.cpp.

nrnpy_object_to_double_

double(* nrnpy_object_to_double_) (Object *) ( Object *  )

extern

Definition at line 14 of file xmenu.cpp.

nrnpy_pyobj_sym_

Symbol* nrnpy_pyobj_sym_

extern

nrnpy_restore_savestate

void(* nrnpy_restore_savestate) (int64_t, char *) ( int64_t  , char *    )

extern

Definition at line 31 of file savstate.cpp.

nrnpy_rvp_pyobj_callback

PyObject* nrnpy_rvp_pyobj_callback = NULL

static

Definition at line 157 of file nrnpy_hoc.cpp.

nrnpy_rvp_rxd_to_callable

Object*(* nrnpy_rvp_rxd_to_callable) (Object *) ( Object *  )

extern

Definition at line 27 of file spaceplt.cpp.

nrnpy_sectionlist_helper_

void(* nrnpy_sectionlist_helper_) (void *, Object *) ( void *  , Object *    )

extern

nrnpy_store_savestate

void(* nrnpy_store_savestate) (char **save_data, uint64_t *save_data_size) ( char **  save_data, uint64_t *  save_data_size  )

extern

Definition at line 32 of file savstate.cpp.

nrnpy_vec_as_numpy_helper_

Object**(* nrnpy_vec_as_numpy_helper_) (int, double *) ( int  , double *    )

extern

Definition at line 140 of file ivocvect.cpp.

nrnpy_vec_from_python_p_

IvocVect*(* nrnpy_vec_from_python_p_) (void *) ( void *  )

extern

Definition at line 138 of file ivocvect.cpp.

nrnpy_vec_math

PyObject* nrnpy_vec_math = NULL

static

Definition at line 2848 of file nrnpy_hoc.cpp.

nrnpy_vec_to_python_p_

Object**(* nrnpy_vec_to_python_p_) (void *) ( void *  )

extern

Definition at line 139 of file ivocvect.cpp.

pfunc_get_docstring

PyObject* pfunc_get_docstring = NULL

static

Definition at line 114 of file nrnpy_hoc.cpp.

plotshape_plot

PyObject* plotshape_plot = NULL

static

Definition at line 154 of file nrnpy_hoc.cpp.

pmech_types

PyObject* pmech_types

extern

Definition at line 88 of file nrnpy_nrn.cpp.

psection_type

PyTypeObject* psection_type

extern

Definition at line 79 of file nrnpy_nrn.cpp.

rangevars_

PyObject* rangevars_

extern

Definition at line 89 of file nrnpy_nrn.cpp.

refuse_to_look

int refuse_to_look

static

Definition at line 1291 of file nrnpy_hoc.cpp.

restore_savestate_

PyObject* restore_savestate_ = NULL

static

Definition at line 2332 of file nrnpy_hoc.cpp.

rvp_plot

PyObject* rvp_plot = NULL

static

Definition at line 153 of file nrnpy_hoc.cpp.

section_object_seen

int section_object_seen

extern

store_savestate_

PyObject* store_savestate_ = NULL

static

Definition at line 2331 of file nrnpy_hoc.cpp.

sym_mat_x

Symbol* sym_mat_x

static

Definition at line 1500 of file nrnpy_hoc.cpp.

sym_netcon_weight

Symbol* sym_netcon_weight

static

Definition at line 1501 of file nrnpy_hoc.cpp.

sym_vec_x

Symbol* sym_vec_x

static

Definition at line 1499 of file nrnpy_hoc.cpp.

toplevel_methods

PyMethodDef toplevel_methods[]

static

Initial value:

= {
    {"ref", mkref, METH_VARARGS, "Wrap to allow call by reference in a hoc function"},
    {"cas", nrnpy_cas, METH_VARARGS, "Return the currently accessed section."},
    {"allsec", nrnpy_forall, METH_VARARGS, "Return iterator over all sections."},
    {"Section",
     (PyCFunction) nrnpy_newsecobj,
     METH_VARARGS | METH_KEYWORDS,
     "Return a new Section"},
    {"setpointer", setpointer, METH_VARARGS, "Assign hoc variable address to NMODL POINTER"},
    {"libpython_path",
     libpython_path,
     METH_NOARGS,
     "Return full path to file that contains Py_Initialize()"},
    {NULL, NULL, 0, NULL}}

Definition at line 2818 of file nrnpy_hoc.cpp.

topmethdict

PyObject* topmethdict = NULL

static

Definition at line 119 of file nrnpy_hoc.cpp.

vec_as_numpy

PyObject*(* vec_as_numpy) (int, double *) ( int  , double *    )

static

Definition at line 2325 of file nrnpy_hoc.cpp.