ivocvect.h

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#ifndef ivoc_vector_h
#define ivoc_vector_h
 
// definition of vector classes from the gnu c++ class library
#include <nrnmutdec.h>
#include <vector>
#include <numeric>
#include <algorithm>
 
extern "C" {
extern void notify_freed_val_array(double*, size_t);
}
 
#define Vect IvocVect
using ParentVect = std::vector<double>;
struct Object;
 
class IvocVect {
  public:
    IvocVect(Object* obj = NULL);
    IvocVect(int, Object* obj = NULL);
    IvocVect(int, double, Object* obj = NULL);
    IvocVect(IvocVect&, Object* obj = NULL);
    ~IvocVect();
 
    Object** temp_objvar();
    int buffer_size();
    void buffer_size(int);
    void label(const char*);
 
    inline double& elem(int n) {
        return vec_.at(n);
    }
 
    inline std::vector<double>& vec() {
        return vec_;
    }
 
    inline double* data() {
        return vec_.data();
    }
 
    inline size_t size() const {
        return vec_.size();
    }
 
    inline void resize(size_t n) {
        if (n > vec_.size()) {
            notify_freed_val_array(vec_.data(), vec_.size());
        }
        vec_.resize(n);
    }
 
    inline void resize(size_t n, double fill_value) {
        if (n > vec_.size()) {
            notify_freed_val_array(vec_.data(), vec_.size());
        }
        vec_.resize(n, fill_value);
    }
 
    inline double& operator[](size_t index) {
        return vec_.at(index);
    }
 
    inline auto begin() -> std::vector<double>::iterator {
        return vec_.begin();
    }
 
    inline auto end() -> std::vector<double>::iterator {
        return vec_.end();
    }
 
    inline void push_back(double v) {
        vec_.push_back(v);
    }
 
#if USE_PTHREAD
    void mutconstruct(int mkmut) {
        if (!mut_)
            MUTCONSTRUCT(mkmut)
    }
#else
    void mutconstruct(int) {}
#endif
    void lock() {
        MUTLOCK
    }
    void unlock() {
        MUTUNLOCK
    }
 
  public:
    // intended as friend static Object** temp_objvar(IvocVect*);
    Object* obj_;  // so far only needed by record and play; not reffed
    char* label_;
    std::vector<double> vec_;  // std::vector holding data
    MUTDEC
};
 
template <class InputIterator>
double var(InputIterator begin, InputIterator end) {
    const size_t size = end - begin;
    const double sum = std::accumulate(begin, end, 0.0);
    const double m = sum / size;
 
    double accum = 0.0;
    std::for_each(begin, end, [&](const double d) { accum += (d - m) * (d - m); });
 
    return accum / (size - 1);
}
 
template <class InputIterator>
double stdDev(InputIterator begin, InputIterator end) {
    return sqrt(var(begin, end));
}
 
extern "C" {
extern Vect* vector_new(int, Object*);  // use this if possible
extern Vect* vector_new0();
extern Vect* vector_new1(int);
extern Vect* vector_new2(Vect*);
extern void vector_delete(Vect*);
extern int vector_buffer_size(Vect*);
extern Object** vector_temp_objvar(Vect*);
extern Object** vector_pobj(Vect*);
 
extern int is_vector_arg(int);
extern char* vector_get_label(Vect*);
extern void vector_set_label(Vect*, char*);
}  // extern "C"
 
#if defined(__cplusplus)
extern "C" {
#endif
 
extern Vect* vector_arg(int);
extern double* vector_vec(Vect*);
extern int vector_capacity(Vect*);
extern void vector_resize(Vect*, int);
 
#if defined(__cplusplus)
}
#endif
 
#endif