#include "utils/profile/profiler_interface.h"
#include <../../nrnconf.h>
#include <InterViews/resource.h>
#include <math.h>
#include <nrnmpi.h>
#include <nrnoc2iv.h>
#include <stdio.h>
#include <stdlib.h>
#include <unordered_map>
#include <bbs.h>
#include <errno.h>
#include <netcon.h>
#include <cvodeobj.h>
#include <netcvode.h>
#include <vector>
#include "ivocvect.h"
#include "nrncore_write.h"

Macros
#define	MD 2147483648.

#define	BGP_INTERVAL 2

#define	BGPDMA 0

#define	TBUFSIZE 0

#define	TBUF

Typedefs
using	Gid2PreSyn = std::unordered_map< int, PreSyn * >

typedef void(*	PFIO) (int, Object *)

Functions
static void	alloc_space ()

Point_process *	ob2pntproc (Object *)

void	nrn_pending_selfqueue (double, NrnThread *)

int	vector_capacity (IvocVect *)

double *	vector_vec (IvocVect *)

Object *	nrn_sec2cell (Section *)

void	ncs2nrn_integrate (double tstop)

void	nrn_fake_fire (int gid, double firetime, int fake_out)

int	nrnmpi_spike_compress (int nspike, bool gid_compress, int xchng_meth)

void	nrn_cleanup_presyn (PreSyn *)

int	nrn_set_timeout (int)

void	nrnmpi_gid_clear (int)

void	nrn_partrans_clear ()

void	nrn_spike_exchange_init ()

double	nrn_bgp_receive_time (int)

void	nrn_gidout_iter (PFIO)

Object *	nrn_gid2obj (int)

PreSyn *	nrn_gid2presyn (int)

int	nrn_gid_exists (int)

int	nrnthread_all_spike_vectors_return (std::vector< double > &spiketvec, std::vector< int > &spikegidvec)
	NEURON callback used from CORENEURON to transfer all spike vectors after simulation. More...

void	nrnmpi_multisplit_clear ()

static double	set_mindelay (double maxdelay)

static int	nrn_need_npe ()

static void	calc_actual_mindelay ()

static Object *	gid2obj_ (int gid)

PreSyn *	nrn_gid2outputpresyn (int gid)

static int	weightcnt (NetCon *nc)

size_t	nrncore_netpar_bytes ()

void	nrncore_netpar_cellgroups_helper (CellGroup *cgs)

Variables
static int	n_bgp_interval

static Symbol *	netcon_sym_

static Gid2PreSyn	gid2out_

static Gid2PreSyn	gid2in_

static IvocVect *	all_spiketvec = NULL

static IvocVect *	all_spikegidvec = NULL

static double	t_exchange_

static double	dt1_

NetCvode *	net_cvode_instance

double	t

double	dt

int	cvode_active_

int	nrn_use_selfqueue_

double	nrnmpi_step_wait_

static int	active_

static double	usable_mindelay_

static double	min_interprocessor_delay_

static double	mindelay_

static double	last_maxstep_arg_

static NetParEvent *	npe_

static int	n_npe_

static int	gid_donot_remove = 0

static int	timeout_ = 20

int *	nrn_prop_param_size_

int *	pnt_receive_size

short *	nrn_is_artificial_

Macro Definition Documentation

◆ BGP_INTERVAL

#define BGP_INTERVAL 2

Definition at line 27 of file netpar.cpp.

◆ BGPDMA

#define BGPDMA 0

Definition at line 81 of file netpar.cpp.

◆ MD

#define MD 2147483648.

Definition at line 13 of file netpar.cpp.

◆ TBUF

#define TBUF

Definition at line 455 of file netpar.cpp.

◆ TBUFSIZE

#define TBUFSIZE 0

Definition at line 454 of file netpar.cpp.

Typedef Documentation

◆ Gid2PreSyn

using Gid2PreSyn = std::unordered_map<int, PreSyn*>

Definition at line 18 of file netpar.cpp.

◆ PFIO

typedef void(* PFIO) (int, Object *)

Definition at line 61 of file netpar.cpp.

Function Documentation

◆ alloc_space()

static void alloc_space ( )

static

Definition at line 930 of file netpar.cpp.

◆ calc_actual_mindelay()

static void calc_actual_mindelay ( )

static

Definition at line 439 of file netpar.cpp.

◆ gid2obj_()

static Object* gid2obj_ ( int gid )

static

Definition at line 1152 of file netpar.cpp.

◆ ncs2nrn_integrate()

void ncs2nrn_integrate ( double tstop )

Definition at line 3832 of file netcvode.cpp.

◆ nrn_bgp_receive_time()

double nrn_bgp_receive_time ( int type )

Definition at line 85 of file netpar.cpp.

◆ nrn_cleanup_presyn()

void nrn_cleanup_presyn ( PreSyn * ps )

Definition at line 976 of file netpar.cpp.

◆ nrn_fake_fire()

void nrn_fake_fire	(	int	gid,
		double	firetime,
		int	fake_out
	)

Definition at line 905 of file netpar.cpp.

◆ nrn_gid2obj()

Object* nrn_gid2obj ( int gid )

Definition at line 1581 of file netpar.cpp.

◆ nrn_gid2outputpresyn()

PreSyn* nrn_gid2outputpresyn ( int gid )

Definition at line 1573 of file netpar.cpp.

◆ nrn_gid2presyn()

PreSyn* nrn_gid2presyn ( int gid )

Definition at line 1585 of file netpar.cpp.

◆ nrn_gid_exists()

int nrn_gid_exists ( int gid )

Definition at line 1045 of file netpar.cpp.

◆ nrn_gidout_iter()

void nrn_gidout_iter ( PFIO callback )

Definition at line 1591 of file netpar.cpp.

◆ nrn_need_npe()

static int nrn_need_npe ( )

static

Definition at line 413 of file netpar.cpp.

◆ nrn_partrans_clear()

void nrn_partrans_clear ( )

Definition at line 897 of file partrans.cpp.

◆ nrn_pending_selfqueue()

void nrn_pending_selfqueue	(	double	tt,
		NrnThread *	nt
	)

Definition at line 3890 of file netcvode.cpp.

◆ nrn_sec2cell()

Object* nrn_sec2cell ( Section * sec )

Definition at line 233 of file cabcode.cpp.

◆ nrn_set_timeout()

int nrn_set_timeout ( int timeout )

Definition at line 1248 of file netpar.cpp.

◆ nrn_spike_exchange_init()

void nrn_spike_exchange_init ( void )

Definition at line 458 of file netpar.cpp.

◆ nrncore_netpar_bytes()

size_t nrncore_netpar_bytes ( )

Definition at line 1611 of file netpar.cpp.

◆ nrncore_netpar_cellgroups_helper()

void nrncore_netpar_cellgroups_helper ( CellGroup * cgs )

Definition at line 1658 of file netpar.cpp.

◆ nrnmpi_gid_clear()

void nrnmpi_gid_clear ( int arg )

Definition at line 994 of file netpar.cpp.

◆ nrnmpi_multisplit_clear()

void nrnmpi_multisplit_clear ( )

Definition at line 509 of file multisplit.cpp.

◆ nrnmpi_spike_compress()

int nrnmpi_spike_compress	(	int	nspike,
		bool	gid_compress,
		int	xchng_meth
	)

Definition at line 1494 of file netpar.cpp.

◆ nrnthread_all_spike_vectors_return()

int nrnthread_all_spike_vectors_return	(	std::vector< double > &	spiketvec,
		std::vector< int > &	spikegidvec
	)

NEURON callback used from CORENEURON to transfer all spike vectors after simulation.

Parameters

spiketvec	- vector of spikes
spikegidvec	- vector of gids

Returns: 1 if CORENEURON shall drop writing out.dat; 0 otherwise

Definition at line 1329 of file netpar.cpp.

◆ ob2pntproc()

Point_process* ob2pntproc ( Object * ob )

Definition at line 88 of file hocmech.cpp.

◆ set_mindelay()

static double set_mindelay ( double maxdelay )

static

Definition at line 1361 of file netpar.cpp.

◆ vector_capacity()

int vector_capacity ( IvocVect * )

◆ vector_vec()

double* vector_vec ( IvocVect * )

◆ weightcnt()

static int weightcnt ( NetCon * nc )

static

Definition at line 1606 of file netpar.cpp.

Variable Documentation

◆ active_

int active_

static

Definition at line 205 of file netpar.cpp.

◆ all_spikegidvec

IvocVect* all_spikegidvec = NULL

static

Definition at line 36 of file netpar.cpp.

◆ all_spiketvec

IvocVect* all_spiketvec = NULL

static

Definition at line 35 of file netpar.cpp.

◆ cvode_active_

int cvode_active_

extern

Definition at line 163 of file fadvance.cpp.

◆ dt

double dt

Definition at line 42 of file netpar.cpp.

◆ dt1_

double dt1_

static

Definition at line 38 of file netpar.cpp.

◆ gid2in_

Gid2PreSyn gid2in_

static

Definition at line 34 of file netpar.cpp.

◆ gid2out_

Gid2PreSyn gid2out_

static

Definition at line 33 of file netpar.cpp.

◆ gid_donot_remove

int gid_donot_remove = 0

static

Definition at line 974 of file netpar.cpp.

◆ last_maxstep_arg_

double last_maxstep_arg_

static

Definition at line 209 of file netpar.cpp.

◆ min_interprocessor_delay_

double min_interprocessor_delay_

static

Definition at line 207 of file netpar.cpp.

◆ mindelay_

double mindelay_

static

Definition at line 208 of file netpar.cpp.

◆ n_bgp_interval

int n_bgp_interval

static

Definition at line 29 of file netpar.cpp.

◆ n_npe_

int n_npe_

static

Definition at line 211 of file netpar.cpp.

◆ net_cvode_instance

NetCvode* net_cvode_instance

extern

Definition at line 27 of file cvodestb.cpp.

◆ netcon_sym_

Symbol* netcon_sym_

static

Definition at line 32 of file netpar.cpp.

◆ npe_

NetParEvent* npe_

static

Definition at line 210 of file netpar.cpp.

◆ nrn_is_artificial_

short* nrn_is_artificial_

extern

Definition at line 193 of file init.cpp.

◆ nrn_prop_param_size_

int* nrn_prop_param_size_

extern

Definition at line 140 of file init.cpp.

◆ nrn_use_selfqueue_

int nrn_use_selfqueue_

extern

Definition at line 93 of file netcvode.cpp.

◆ nrnmpi_step_wait_

double nrnmpi_step_wait_

extern

Definition at line 40 of file ocbbs.cpp.

◆ pnt_receive_size

int* pnt_receive_size

extern

Definition at line 135 of file init.cpp.

◆ t

double t

extern

Definition at line 59 of file cvodeobj.cpp.

◆ t_exchange_

double t_exchange_

static

Definition at line 37 of file netpar.cpp.

◆ timeout_

int timeout_ = 20

static

Definition at line 1247 of file netpar.cpp.

◆ usable_mindelay_

double usable_mindelay_

static

Definition at line 206 of file netpar.cpp.

Macros

Typedefs

Functions

Variables

Macro Definition Documentation

◆ BGP_INTERVAL

◆ BGPDMA

◆ MD

◆ TBUF

◆ TBUFSIZE

Typedef Documentation

◆ Gid2PreSyn

◆ PFIO

Function Documentation

◆ alloc_space()

◆ calc_actual_mindelay()

◆ gid2obj_()

◆ ncs2nrn_integrate()

◆ nrn_bgp_receive_time()

◆ nrn_cleanup_presyn()

◆ nrn_fake_fire()

◆ nrn_gid2obj()

◆ nrn_gid2outputpresyn()

◆ nrn_gid2presyn()

◆ nrn_gid_exists()

◆ nrn_gidout_iter()

◆ nrn_need_npe()

◆ nrn_partrans_clear()

◆ nrn_pending_selfqueue()

◆ nrn_sec2cell()

◆ nrn_set_timeout()

◆ nrn_spike_exchange_init()

◆ nrncore_netpar_bytes()

◆ nrncore_netpar_cellgroups_helper()

◆ nrnmpi_gid_clear()

◆ nrnmpi_multisplit_clear()

◆ nrnmpi_spike_compress()

◆ nrnthread_all_spike_vectors_return()

◆ ob2pntproc()

◆ set_mindelay()

◆ vector_capacity()

◆ vector_vec()

◆ weightcnt()

Variable Documentation

◆ active_

◆ all_spikegidvec

◆ all_spiketvec

◆ cvode_active_

◆ dt

◆ dt1_

◆ gid2in_

◆ gid2out_

◆ gid_donot_remove

◆ last_maxstep_arg_

◆ min_interprocessor_delay_

◆ mindelay_

◆ n_bgp_interval

◆ n_npe_

◆ net_cvode_instance

◆ netcon_sym_

◆ npe_

◆ nrn_is_artificial_

◆ nrn_prop_param_size_

◆ nrn_use_selfqueue_

◆ nrnmpi_step_wait_

◆ pnt_receive_size

◆ t

◆ t_exchange_

◆ timeout_

◆ usable_mindelay_