#include <stdio.h>
#include <assert.h>
#include "nrnpython.h"
#include "grids.h"
#include "rxd.h"

Functions
void	make_time_ptr (PyHocObject my_dt_ptr, PyHocObject my_t_ptr)

static double	get_alpha_scalar (double *alpha, int)

static double	get_alpha_array (double *alpha, int idx)

static double	get_permeability_scalar (double *, int)

static double	get_permeability_array (double *permeability, int idx)

int	ECS_insert (int grid_list_index, PyHocObject my_states, int my_num_states_x, int my_num_states_y, int my_num_states_z, double my_dc_x, double my_dc_y, double my_dc_z, double my_dx, double my_dy, double my_dz, PyHocObject my_alpha, PyHocObject *my_permeability, int bc, double bc_value, double atolscale)

int	ICS_insert (int grid_list_index, PyHocObject my_states, long num_nodes, long neighbors, long x_line_defs, long x_lines_length, long y_line_defs, long y_lines_length, long z_line_defs, long z_lines_length, double dcs, double dx, bool is_diffusable, double atolscale, double *ics_alphas)

int	ICS_insert_inhom (int grid_list_index, PyHocObject my_states, long num_nodes, long neighbors, long x_line_defs, long x_lines_length, long y_line_defs, long y_lines_length, long z_line_defs, long z_lines_length, double dcs, double dx, bool is_diffusable, double atolscale, double *ics_alphas)

int	set_diffusion (int grid_list_index, int grid_id, double *dc, int length)

int	set_tortuosity (int grid_list_index, int grid_id, PyHocObject *my_permeability)

int	set_volume_fraction (int grid_list_index, int grid_id, PyHocObject *my_alpha)

void	ics_set_grid_concentrations (int grid_list_index, int index_in_list, int64_t nodes_per_seg, int64_t nodes_per_seg_start_indices, PyObject *neuron_pointers)

void	ics_set_grid_currents (int grid_list_index, int index_in_list, PyObject neuron_pointers, double scale_factors)

void	set_grid_concentrations (int grid_list_index, int index_in_list, PyObject grid_indices, PyObject neuron_pointers)

void	set_grid_currents (int grid_list_index, int index_in_list, PyObject grid_indices, PyObject neuron_pointers, PyObject *scale_factors)

int	remove (Grid_node *head, Grid_node find)

void	delete_by_id (int id)

void	empty_list (int list_index)

static void *	gather_currents (void *dataptr)

static int	find_min_element_index (const int thread_sizes[], const int nthreads)

Variables
int	NUM_THREADS

double *	dt_ptr

double *	t_ptr

Grid_node *	Parallel_grids [100] = {NULL}

TaskQueue *	AllTasks

int	_memb_curr_total

int *	_rxd_induced_currents_grid

int *	_rxd_induced_currents_ecs_idx

double *	_rxd_induced_currents_ecs

double *	_rxd_induced_currents_scale

Function Documentation

◆ delete_by_id()

void delete_by_id ( int id )

Definition at line 786 of file grids.cpp.

◆ ECS_insert()

int ECS_insert	(	int	grid_list_index,
		PyHocObject *	my_states,
		int	my_num_states_x,
		int	my_num_states_y,
		int	my_num_states_z,
		double	my_dc_x,
		double	my_dc_y,
		double	my_dc_z,
		double	my_dx,
		double	my_dy,
		double	my_dz,
		PyHocObject *	my_alpha,
		PyHocObject *	my_permeability,
		int	bc,
		double	bc_value,
		double	atolscale
	)

Definition at line 197 of file grids.cpp.

◆ empty_list()

void empty_list ( int list_index )

Definition at line 799 of file grids.cpp.

◆ find_min_element_index()

static int find_min_element_index	(	const int	thread_sizes[],
		const int	nthreads
	)

static

Definition at line 1290 of file grids.cpp.

◆ gather_currents()

static void* gather_currents ( void * dataptr )

static

Definition at line 848 of file grids.cpp.

◆ get_alpha_array()

static double get_alpha_array	(	double *	alpha,
		int	idx
	)

static

Definition at line 36 of file grids.cpp.

◆ get_alpha_scalar()

static double get_alpha_scalar	(	double *	alpha,
		int
	)

static

Definition at line 33 of file grids.cpp.

◆ get_permeability_array()

static double get_permeability_array	(	double *	permeability,
		int	idx
	)

static

Definition at line 44 of file grids.cpp.

◆ get_permeability_scalar()

static double get_permeability_scalar	(	double *	,
		int
	)

static

Definition at line 41 of file grids.cpp.

◆ ICS_insert()

int ICS_insert	(	int	grid_list_index,
		PyHocObject *	my_states,
		long	num_nodes,
		long *	neighbors,
		long *	x_line_defs,
		long	x_lines_length,
		long *	y_line_defs,
		long	y_lines_length,
		long *	z_line_defs,
		long	z_lines_length,
		double *	dcs,
		double	dx,
		bool	is_diffusable,
		double	atolscale,
		double *	ics_alphas
	)

Definition at line 386 of file grids.cpp.

◆ ICS_insert_inhom()

int ICS_insert_inhom	(	int	grid_list_index,
		PyHocObject *	my_states,
		long	num_nodes,
		long *	neighbors,
		long *	x_line_defs,
		long	x_lines_length,
		long *	y_line_defs,
		long	y_lines_length,
		long *	z_line_defs,
		long	z_lines_length,
		double *	dcs,
		double	dx,
		bool	is_diffusable,
		double	atolscale,
		double *	ics_alphas
	)

Definition at line 420 of file grids.cpp.

◆ ics_set_grid_concentrations()

void ics_set_grid_concentrations	(	int	grid_list_index,
		int	index_in_list,
		int64_t *	nodes_per_seg,
		int64_t *	nodes_per_seg_start_indices,
		PyObject *	neuron_pointers
	)

Definition at line 590 of file grids.cpp.

◆ ics_set_grid_currents()

void ics_set_grid_currents	(	int	grid_list_index,
		int	index_in_list,
		PyObject *	neuron_pointers,
		double *	scale_factors
	)

Definition at line 618 of file grids.cpp.

◆ make_time_ptr()

void make_time_ptr	(	PyHocObject *	my_dt_ptr,
		PyHocObject *	my_t_ptr
	)

Definition at line 28 of file grids.cpp.

◆ remove()

int remove	(	Grid_node **	head,
		Grid_node *	find
	)

Definition at line 767 of file grids.cpp.

◆ set_diffusion()

int set_diffusion	(	int	grid_list_index,
		int	grid_id,
		double *	dc,
		int	length
	)

Definition at line 454 of file grids.cpp.

◆ set_grid_concentrations()

void set_grid_concentrations	(	int	grid_list_index,
		int	index_in_list,
		PyObject *	grid_indices,
		PyObject *	neuron_pointers
	)

Definition at line 641 of file grids.cpp.

◆ set_grid_currents()

void set_grid_currents	(	int	grid_list_index,
		int	index_in_list,
		PyObject *	grid_indices,
		PyObject *	neuron_pointers,
		PyObject *	scale_factors
	)

Definition at line 682 of file grids.cpp.

◆ set_tortuosity()

int set_tortuosity	(	int	grid_list_index,
		int	grid_id,
		PyHocObject *	my_permeability
	)

Definition at line 467 of file grids.cpp.

◆ set_volume_fraction()

int set_volume_fraction	(	int	grid_list_index,
		int	grid_id,
		PyHocObject *	my_alpha
	)

Definition at line 518 of file grids.cpp.

Variable Documentation

◆ _memb_curr_total

int _memb_curr_total

extern

Definition at line 74 of file rxd.cpp.

◆ _rxd_induced_currents_ecs

double* _rxd_induced_currents_ecs

extern

◆ _rxd_induced_currents_ecs_idx

int* _rxd_induced_currents_ecs_idx

extern

◆ _rxd_induced_currents_grid

int* _rxd_induced_currents_grid

extern

Definition at line 95 of file rxd.cpp.

◆ _rxd_induced_currents_scale

double* _rxd_induced_currents_scale

extern

Definition at line 80 of file rxd.cpp.

◆ AllTasks

TaskQueue* AllTasks

extern

Definition at line 28 of file rxd.cpp.

◆ dt_ptr

double* dt_ptr

Definition at line 14 of file grids.cpp.

◆ NUM_THREADS

int NUM_THREADS

extern

Definition at line 26 of file rxd.cpp.

◆ Parallel_grids

Grid_node* Parallel_grids[100] = {NULL}

Definition at line 16 of file grids.cpp.

◆ t_ptr

double* t_ptr

Definition at line 15 of file grids.cpp.

Functions

Variables

Function Documentation

◆ delete_by_id()

◆ ECS_insert()

◆ empty_list()

◆ find_min_element_index()

◆ gather_currents()

◆ get_alpha_array()

◆ get_alpha_scalar()

◆ get_permeability_array()

◆ get_permeability_scalar()

◆ ICS_insert()

◆ ICS_insert_inhom()

◆ ics_set_grid_concentrations()

◆ ics_set_grid_currents()

◆ make_time_ptr()

◆ remove()

◆ set_diffusion()

◆ set_grid_concentrations()

◆ set_grid_currents()

◆ set_tortuosity()

◆ set_volume_fraction()

Variable Documentation

◆ _memb_curr_total

◆ _rxd_induced_currents_ecs

◆ _rxd_induced_currents_ecs_idx

◆ _rxd_induced_currents_grid

◆ _rxd_induced_currents_scale

◆ AllTasks

◆ dt_ptr

◆ NUM_THREADS

◆ Parallel_grids

◆ t_ptr