#include <../../nrnconf.h>
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <nrnpython_config.h>
#include "section.h"
#include "nrniv_mf.h"
#include "membfunc.h"
#include "parse.hpp"
#include "hocparse.h"
#include "membdef.h"

Macros
#define	HOC_L_LIST 1

#define	symlist hoc_symlist

#define	NSECSTACK 200

#define	CAB_SIZE 10

#define	PI 3.14159265358979323846

#define	relative(pc) (pc + (pc)->i)

Functions
static int	range_vec_indx (Symbol *s)

int	nrn_isecstack (void)

void	nrn_secstack (int i)

void	nrn_initcode (void)

void	oc_save_cabcode (int a1, int a2)

void	oc_restore_cabcode (int a1, int a2)

void	nrn_pushsec (Section *sec)

void	nrn_popsec (void)

void	sec_access_pop (void)

void	add_section (void)

Object *	nrn_sec2cell (Section *sec)

int	nrn_sec2cell_equals (Section sec, Object obj)

static Section *	new_section (Object ob, Symbol sym, int i)

void	new_sections (Object ob, Symbol sym, Item **pitm, int size)

void	delete_section (void)

double	section_length (Section *sec)

int	arc0at0 (Section *sec)

double	nrn_ra (Section *sec)

void	cab_alloc (Prop *p)

void	morph_alloc (Prop *p)

double	nrn_diameter (Node *nd)

void	nrn_chk_section (Symbol *s)

Section *	chk_access (void)

Section *	nrn_noerr_access (void)

void	nrn_remove_sibling_list (Section *sec)

static double	ncp_abs (Section *sec)

void	nrn_add_sibling_list (Section *sec)

static void	reverse_sibling_list (Section *sec)

void	disconnect (void)

static void	reverse_nodes (Section *sec)

void	nrn_disconnect (Section *sec)

static void	connectsec_impl (Section parent, Section sec)

void	simpleconnectsection (void)

void	connectsection (void)

static Section *	Sec_access (void)

void	sec_access (void)

void	sec_access_object (void)

void	sec_access_push (void)

Section *	nrn_sec_pop (void)

void	hoc_sec_internal_push (void)

void *	hoc_sec_internal_name2ptr (const char *s, int eflag)

void *	hoc_pysec_name2ptr (const char *s, int eflag)

void	ob_sec_access_push (Item *qsec)

void	ob_sec_access (void)

void	mech_access (void)

void	mech_insert1 (Section *sec, int type)

void	mech_uninsert (void)

void	mech_uninsert1 (Section sec, Symbol s)

void	nrn_rangeconst (Section sec, Symbol s, double *pd, int op)

void	range_const (void)

Prop *	nrn_mechanism (int type, Node *nd)

Prop *	nrn_mechanism_check (int type, Section *sec, int inode)

Prop *	hoc_getdata_range (int type)

static Datum *	pdprop (Symbol s, int indx, Section sec, short inode)

void	connectpointer (void)

void	range_interpolate_single (void)

void	range_interpolate (void)

int	nrn_exists (Symbol s, Node node)

double *	nrn_rangepointer (Section sec, Symbol s, double d)

double *	nrnpy_rangepointer (Section sec, Symbol s, double d, int *err)

void	rangevarevalpointer (void)

void	rangevareval (void)

void	rangepoint (void)

int	node_index (Section *sec, double x)

int	node_index_exact (Section *sec, double x)

double	cable_prop_eval (Symbol *sym)

double *	cable_prop_eval_pointer (Symbol *sym)

void	keep_nseg_parm (void)

void	nrn_change_nseg (Section *sec, int n)

void	cable_prop_assign (Symbol sym, double pd, int op)

double	nrn_connection_position (Section *sec)

double	nrn_section_orientation (Section *sec)

int	nrn_at_beginning (Section *sec)

static void	nrn_rootnode_alloc (Section *sec)

Section *	nrn_trueparent (Section *sec)

void	nrn_parent_info (Section *s)

void	setup_topology (void)

const char *	secname (Section *sec)

const char *	nrn_sec2pysecname (Section *sec)

void	section_owner (void)

char *	hoc_section_pathname (Section *sec)

double	nrn_arc_position (Section sec, Node node)

const char *	sec_and_position (Section sec, Node nd)

int	segment_limits (double *pdx)

Node *	node_exact (Section *sec, double x)

Node *	node_ptr (Section sec, double x, double parea)

int	nrn_get_mechtype (const char *mechname)

int	nrn_instance_count (int mechtype)

double *	nrn_vext_pd (Symbol s, int indx, Node nd)

double *	dprop (Symbol s, int indx, Section sec, short inode)

double *	nrnpy_dprop (Symbol s, int indx, Section sec, short inode, int *err)

static char *	objectname (void)

void	forall_section (void)

void	hoc_ifsec (void)

void	issection (void)

int	has_membrane (char mechanism_name, Section sec)

void	ismembrane (void)

const char *	secaccessname (void)

void	sectionname (void)

void	hoc_secname (void)

static double	chk_void2dbl (void vp, const char mes)

void	this_section (void)

void	this_node (void)

void	parent_section (void)

void	parent_connection (void)

void	section_orientation (void)

void	parent_node (void)

void	pop_section (void)

void	hoc_level_pushsec (Section *sec)

void	push_section (void)

Section *	nrn_section_exists (char name, int indx, Object cell)

void	section_exists (void)

Variables
int	hoc_execerror_messages

int	tree_changed = 1

int	diam_changed = 1

int	nrn_shape_changed_

int	v_structure_change

char (	nrnpy_pysec_name_p_ )(Section *)

Object (	nrnpy_pysec_cell_p_ )(Section *)

int(*	nrnpy_pysec_cell_equals_p_ )(Section , Object )

static Section *	secstack [NSECSTACK+1]

static int	isecstack = 0

static int	skip_secstack_check = 0

int	keep_nseg_parm_

Macro Definition Documentation

◆ CAB_SIZE

#define CAB_SIZE 10

◆ HOC_L_LIST

#define HOC_L_LIST 1

Definition at line 4 of file cabcode.cpp.

◆ NSECSTACK

#define NSECSTACK 200

Definition at line 42 of file cabcode.cpp.

◆ PI

#define PI 3.14159265358979323846

Definition at line 1938 of file cabcode.cpp.

◆ relative

#define relative ( pc ) (pc + (pc)->i)

Definition at line 2135 of file cabcode.cpp.

◆ symlist

#define symlist hoc_symlist

Definition at line 17 of file cabcode.cpp.

Function Documentation

◆ add_section()

void add_section ( void )

Definition at line 186 of file cabcode.cpp.

◆ arc0at0()

int arc0at0 ( Section * sec )

Definition at line 399 of file cabcode.cpp.

◆ cab_alloc()

void cab_alloc ( Prop * p )

Definition at line 407 of file cabcode.cpp.

◆ cable_prop_assign()

void cable_prop_assign	(	Symbol *	sym,
		double *	pd,
		int	op
	)

Definition at line 1598 of file cabcode.cpp.

◆ cable_prop_eval()

double cable_prop_eval ( Symbol * sym )

Definition at line 1518 of file cabcode.cpp.

◆ cable_prop_eval_pointer()

double* cable_prop_eval_pointer ( Symbol * sym )

Definition at line 1536 of file cabcode.cpp.

◆ chk_access()

Section* chk_access ( void )

Definition at line 444 of file cabcode.cpp.

◆ chk_void2dbl()

static double chk_void2dbl	(	void *	vp,
		const char *	mes
	)

static

Definition at line 2288 of file cabcode.cpp.

◆ connectpointer()

void connectpointer ( void )

Definition at line 1125 of file cabcode.cpp.

◆ connectsec_impl()

static void connectsec_impl	(	Section *	parent,
		Section *	sec
	)

static

Definition at line 615 of file cabcode.cpp.

◆ connectsection()

void connectsection ( void )

Definition at line 673 of file cabcode.cpp.

◆ delete_section()

void delete_section ( void )

Definition at line 322 of file cabcode.cpp.

◆ disconnect()

void disconnect ( void )

Definition at line 569 of file cabcode.cpp.

◆ dprop()

double* dprop	(	Symbol *	s,
		int	indx,
		Section *	sec,
		short	inode
	)

Definition at line 2061 of file cabcode.cpp.

◆ forall_section()

void forall_section ( void )

Definition at line 2137 of file cabcode.cpp.

◆ has_membrane()

int has_membrane	(	char *	mechanism_name,
		Section *	sec
	)

Definition at line 2236 of file cabcode.cpp.

◆ hoc_getdata_range()

Prop* hoc_getdata_range ( int type )

Definition at line 1107 of file cabcode.cpp.

◆ hoc_ifsec()

void hoc_ifsec ( void )

Definition at line 2211 of file cabcode.cpp.

◆ hoc_level_pushsec()

void hoc_level_pushsec ( Section * sec )

Definition at line 2369 of file cabcode.cpp.

◆ hoc_sec_internal_push()

void hoc_sec_internal_push ( void )

Definition at line 757 of file cabcode.cpp.

◆ hoc_secname()

void hoc_secname ( void )

Definition at line 2273 of file cabcode.cpp.

◆ hoc_section_pathname()

char* hoc_section_pathname ( Section * sec )

Definition at line 1835 of file cabcode.cpp.

◆ ismembrane()

void ismembrane ( void )

Definition at line 2248 of file cabcode.cpp.

◆ issection()

void issection ( void )

Definition at line 2227 of file cabcode.cpp.

◆ keep_nseg_parm()

void keep_nseg_parm ( void )

Definition at line 1550 of file cabcode.cpp.

◆ mech_access()

void mech_access ( void )

Definition at line 843 of file cabcode.cpp.

◆ mech_insert1()

void mech_insert1	(	Section *	sec,
		int	type
	)

Definition at line 849 of file cabcode.cpp.

◆ mech_uninsert()

void mech_uninsert ( void )

Definition at line 910 of file cabcode.cpp.

◆ mech_uninsert1()

void mech_uninsert1	(	Section *	sec,
		Symbol *	s
	)

Definition at line 916 of file cabcode.cpp.

◆ morph_alloc()

void morph_alloc ( Prop * p )

Definition at line 423 of file cabcode.cpp.

◆ ncp_abs()

static double ncp_abs ( Section * sec )

static

Definition at line 519 of file cabcode.cpp.

◆ new_section()

static Section* new_section	(	Object *	ob,
		Symbol *	sym,
		int	i
	)

static

Definition at line 259 of file cabcode.cpp.

◆ new_sections()

void new_sections	(	Object *	ob,
		Symbol *	sym,
		Item **	pitm,
		int	size
	)

Definition at line 289 of file cabcode.cpp.

◆ node_exact()

Node* node_exact	(	Section *	sec,
		double	x
	)

Definition at line 1940 of file cabcode.cpp.

◆ node_index()

int node_index	(	Section *	sec,
		double	x
	)

Definition at line 1471 of file cabcode.cpp.

◆ node_index_exact()

int node_index_exact	(	Section *	sec,
		double	x
	)

Definition at line 1497 of file cabcode.cpp.

◆ node_ptr()

Node* node_ptr	(	Section *	sec,
		double	x,
		double *	parea
	)

Definition at line 1986 of file cabcode.cpp.

◆ nrn_add_sibling_list()

void nrn_add_sibling_list ( Section * sec )

Definition at line 529 of file cabcode.cpp.

◆ nrn_arc_position()

double nrn_arc_position	(	Section *	sec,
		Node *	node
	)

Definition at line 1867 of file cabcode.cpp.

◆ nrn_at_beginning()

int nrn_at_beginning ( Section * sec )

Definition at line 1648 of file cabcode.cpp.

◆ nrn_change_nseg()

void nrn_change_nseg	(	Section *	sec,
		int	n
	)

Definition at line 1557 of file cabcode.cpp.

◆ nrn_chk_section()

void nrn_chk_section ( Symbol * s )

Definition at line 438 of file cabcode.cpp.

◆ nrn_connection_position()

double nrn_connection_position ( Section * sec )

Definition at line 1639 of file cabcode.cpp.

◆ nrn_diameter()

double nrn_diameter ( Node * nd )

Definition at line 432 of file cabcode.cpp.

◆ nrn_disconnect()

void nrn_disconnect ( Section * sec )

Definition at line 594 of file cabcode.cpp.

◆ nrn_exists()

int nrn_exists	(	Symbol *	s,
		Node *	node
	)

Definition at line 1319 of file cabcode.cpp.

◆ nrn_get_mechtype()

int nrn_get_mechtype ( const char * mechname )

Definition at line 2000 of file cabcode.cpp.

◆ nrn_initcode()

void nrn_initcode ( void )

Definition at line 76 of file cabcode.cpp.

◆ nrn_instance_count()

int nrn_instance_count ( int mechtype )

Definition at line 2012 of file cabcode.cpp.

◆ nrn_isecstack()

int nrn_isecstack ( void )

Definition at line 54 of file cabcode.cpp.

◆ nrn_mechanism()

Prop* nrn_mechanism	(	int	type,
		Node *	nd
	)

Definition at line 1079 of file cabcode.cpp.

◆ nrn_mechanism_check()

Prop* nrn_mechanism_check	(	int	type,
		Section *	sec,
		int	inode
	)

Definition at line 1092 of file cabcode.cpp.

◆ nrn_noerr_access()

Section* nrn_noerr_access ( void )

Definition at line 472 of file cabcode.cpp.

◆ nrn_parent_info()

void nrn_parent_info ( Section * s )

Definition at line 1678 of file cabcode.cpp.

◆ nrn_popsec()

void nrn_popsec ( void )

Definition at line 123 of file cabcode.cpp.

◆ nrn_pushsec()

void nrn_pushsec ( Section * sec )

Definition at line 99 of file cabcode.cpp.

◆ nrn_ra()

double nrn_ra ( Section * sec )

Definition at line 403 of file cabcode.cpp.

◆ nrn_rangeconst()

void nrn_rangeconst	(	Section *	sec,
		Symbol *	s,
		double *	pd,
		int	op
	)

Definition at line 958 of file cabcode.cpp.

◆ nrn_rangepointer()

double* nrn_rangepointer	(	Section *	sec,
		Symbol *	s,
		double	d
	)

Definition at line 1335 of file cabcode.cpp.

◆ nrn_remove_sibling_list()

void nrn_remove_sibling_list ( Section * sec )

Definition at line 503 of file cabcode.cpp.

◆ nrn_rootnode_alloc()

static void nrn_rootnode_alloc ( Section * sec )

static

Definition at line 1653 of file cabcode.cpp.

◆ nrn_sec2cell()

Object* nrn_sec2cell ( Section * sec )

Definition at line 233 of file cabcode.cpp.

◆ nrn_sec2cell_equals()

int nrn_sec2cell_equals	(	Section *	sec,
		Object *	obj
	)

Definition at line 248 of file cabcode.cpp.

◆ nrn_sec2pysecname()

const char* nrn_sec2pysecname ( Section * sec )

Definition at line 1811 of file cabcode.cpp.

◆ nrn_sec_pop()

Section* nrn_sec_pop ( void )

Definition at line 751 of file cabcode.cpp.

◆ nrn_secstack()

void nrn_secstack ( int i )

Definition at line 58 of file cabcode.cpp.

◆ nrn_section_exists()

Section* nrn_section_exists	(	char *	name,
		int	indx,
		Object *	cell
	)

Definition at line 2404 of file cabcode.cpp.

◆ nrn_section_orientation()

double nrn_section_orientation ( Section * sec )

Definition at line 1644 of file cabcode.cpp.

◆ nrn_trueparent()

Section* nrn_trueparent ( Section * sec )

Definition at line 1666 of file cabcode.cpp.

◆ nrn_vext_pd()

double* nrn_vext_pd	(	Symbol *	s,
		int	indx,
		Node *	nd
	)

Definition at line 2027 of file cabcode.cpp.

◆ nrnpy_dprop()

double* nrnpy_dprop	(	Symbol *	s,
		int	indx,
		Section *	sec,
		short	inode,
		int *	err
	)

Definition at line 2092 of file cabcode.cpp.

◆ nrnpy_rangepointer()

double* nrnpy_rangepointer	(	Section *	sec,
		Symbol *	s,
		double	d,
		int *	err
	)

Definition at line 1375 of file cabcode.cpp.

◆ ob_sec_access()

void ob_sec_access ( void )

Definition at line 831 of file cabcode.cpp.

◆ ob_sec_access_push()

void ob_sec_access_push ( Item * qsec )

Definition at line 824 of file cabcode.cpp.

◆ objectname()

static char* objectname ( void )

static

Definition at line 2125 of file cabcode.cpp.

◆ oc_restore_cabcode()

void oc_restore_cabcode	(	int *	a1,
		int *	a2
	)

Definition at line 91 of file cabcode.cpp.

◆ oc_save_cabcode()

void oc_save_cabcode	(	int *	a1,
		int *	a2
	)

Definition at line 86 of file cabcode.cpp.

◆ parent_connection()

void parent_connection ( void )

Definition at line 2335 of file cabcode.cpp.

◆ parent_node()

void parent_node ( void )

Definition at line 2347 of file cabcode.cpp.

◆ parent_section()

void parent_section ( void )

Definition at line 2327 of file cabcode.cpp.

◆ pdprop()

static Datum* pdprop	(	Symbol *	s,
		int	indx,
		Section *	sec,
		short	inode
	)

static

Definition at line 1117 of file cabcode.cpp.

◆ pop_section()

void pop_section ( void )

Definition at line 2356 of file cabcode.cpp.

◆ push_section()

void push_section ( void )

Definition at line 2374 of file cabcode.cpp.

◆ range_const()

void range_const ( void )

Definition at line 1053 of file cabcode.cpp.

◆ range_interpolate()

void range_interpolate ( void )

Definition at line 1195 of file cabcode.cpp.

◆ range_interpolate_single()

void range_interpolate_single ( void )

Definition at line 1153 of file cabcode.cpp.

◆ range_vec_indx()

static int range_vec_indx ( Symbol * s )

static

Definition at line 1068 of file cabcode.cpp.

◆ rangepoint()

void rangepoint ( void )

Definition at line 1465 of file cabcode.cpp.

◆ rangevareval()

void rangevareval ( void )

Definition at line 1456 of file cabcode.cpp.

◆ rangevarevalpointer()

void rangevarevalpointer ( void )

Definition at line 1410 of file cabcode.cpp.

◆ reverse_nodes()

static void reverse_nodes ( Section * sec )

static

Definition at line 581 of file cabcode.cpp.

◆ reverse_sibling_list()

static void reverse_sibling_list ( Section * sec )

static

Definition at line 552 of file cabcode.cpp.

◆ Sec_access()

static Section* Sec_access ( void )

static

Definition at line 681 of file cabcode.cpp.

◆ sec_access()

void sec_access ( void )

Definition at line 718 of file cabcode.cpp.

◆ sec_access_object()

void sec_access_object ( void )

Definition at line 730 of file cabcode.cpp.

◆ sec_access_pop()

void sec_access_pop ( void )

Definition at line 145 of file cabcode.cpp.

◆ sec_access_push()

void sec_access_push ( void )

Definition at line 747 of file cabcode.cpp.

◆ sec_and_position()

const char* sec_and_position	(	Section *	sec,
		Node *	nd
	)

Definition at line 1908 of file cabcode.cpp.

◆ secaccessname()

const char* secaccessname ( void )

Definition at line 2257 of file cabcode.cpp.

◆ secname()

const char* secname ( Section * sec )

Definition at line 1776 of file cabcode.cpp.

◆ section_exists()

void section_exists ( void )

Definition at line 2438 of file cabcode.cpp.

◆ section_length()

double section_length ( Section * sec )

Definition at line 387 of file cabcode.cpp.

◆ section_orientation()

void section_orientation ( void )

Definition at line 2341 of file cabcode.cpp.

◆ section_owner()

void section_owner ( void )

Definition at line 1826 of file cabcode.cpp.

◆ sectionname()

void sectionname ( void )

Definition at line 2261 of file cabcode.cpp.

◆ segment_limits()

int segment_limits ( double * pdx )

Definition at line 1919 of file cabcode.cpp.

◆ setup_topology()

void setup_topology ( void )

Definition at line 1724 of file cabcode.cpp.

◆ simpleconnectsection()

void simpleconnectsection ( void )

Definition at line 664 of file cabcode.cpp.

◆ this_node()

void this_node ( void )

Definition at line 2317 of file cabcode.cpp.

◆ this_section()

void this_section ( void )

Definition at line 2309 of file cabcode.cpp.

Variable Documentation

◆ diam_changed

int diam_changed = 1

Definition at line 23 of file cabcode.cpp.

◆ hoc_execerror_messages

int hoc_execerror_messages

extern

Definition at line 680 of file hoc.cpp.

◆ isecstack

int isecstack = 0

static

Definition at line 44 of file cabcode.cpp.

◆ keep_nseg_parm_

int keep_nseg_parm_

Definition at line 1549 of file cabcode.cpp.

◆ nrn_shape_changed_

int nrn_shape_changed_

extern

Definition at line 33 of file neuron.h.

◆ nrnpy_pysec_cell_equals_p_

int(* nrnpy_pysec_cell_equals_p_) (Section , Object )	(	Section *	,
		Object *
	)

Definition at line 31 of file cabcode.cpp.

◆ nrnpy_pysec_cell_p_

Object*(* nrnpy_pysec_cell_p_) (Section *) ( Section * )

Definition at line 30 of file cabcode.cpp.

◆ nrnpy_pysec_name_p_

char*(* nrnpy_pysec_name_p_) (Section *) ( Section * )

Definition at line 29 of file cabcode.cpp.

◆ secstack

Section* secstack[NSECSTACK+1]

static

Definition at line 43 of file cabcode.cpp.

◆ skip_secstack_check

int skip_secstack_check = 0

static

Definition at line 50 of file cabcode.cpp.

◆ tree_changed

int tree_changed = 1

Definition at line 19 of file cabcode.cpp.

◆ v_structure_change

int v_structure_change

extern

Definition at line 99 of file cvodestb.cpp.

Macros

Functions

Variables

Macro Definition Documentation

◆ CAB_SIZE

◆ HOC_L_LIST

◆ NSECSTACK

◆ PI

◆ relative

◆ symlist

Function Documentation

◆ add_section()

◆ arc0at0()

◆ cab_alloc()

◆ cable_prop_assign()

◆ cable_prop_eval()

◆ cable_prop_eval_pointer()

◆ chk_access()

◆ chk_void2dbl()

◆ connectpointer()

◆ connectsec_impl()

◆ connectsection()

◆ delete_section()

◆ disconnect()

◆ dprop()

◆ forall_section()

◆ has_membrane()

◆ hoc_getdata_range()

◆ hoc_ifsec()

◆ hoc_level_pushsec()

◆ hoc_sec_internal_push()

◆ hoc_secname()

◆ hoc_section_pathname()

◆ ismembrane()

◆ issection()

◆ keep_nseg_parm()

◆ mech_access()

◆ mech_insert1()

◆ mech_uninsert()

◆ mech_uninsert1()

◆ morph_alloc()

◆ ncp_abs()

◆ new_section()

◆ new_sections()

◆ node_exact()

◆ node_index()

◆ node_index_exact()

◆ node_ptr()

◆ nrn_add_sibling_list()

◆ nrn_arc_position()

◆ nrn_at_beginning()

◆ nrn_change_nseg()

◆ nrn_chk_section()

◆ nrn_connection_position()

◆ nrn_diameter()

◆ nrn_disconnect()

◆ nrn_exists()

◆ nrn_get_mechtype()

◆ nrn_initcode()

◆ nrn_instance_count()

◆ nrn_isecstack()

◆ nrn_mechanism()

◆ nrn_mechanism_check()

◆ nrn_noerr_access()

◆ nrn_parent_info()

◆ nrn_popsec()

◆ nrn_pushsec()

◆ nrn_ra()

◆ nrn_rangeconst()

◆ nrn_rangepointer()

◆ nrn_remove_sibling_list()

◆ nrn_rootnode_alloc()

◆ nrn_sec2cell()

◆ nrn_sec2cell_equals()

◆ nrn_sec2pysecname()

◆ nrn_sec_pop()

◆ nrn_secstack()

◆ nrn_section_exists()

◆ nrn_section_orientation()

◆ nrn_trueparent()