extcelln.cpp File Reference

#include <../../nrnconf.h>
#include <stdio.h>
#include <math.h>
#include "section.h"
#include "nrniv_mf.h"
#include "hocassrt.h"
#include "parse.hpp"

Go to the source code of this file.

Macros
#define	xraxial   pd /* From Eion */
#define	xg   (pd + (nlayer))
#define	xc   (pd + 2*(nlayer))
#define	e_extracellular   pd[3*(nlayer)]
#define	i_membrane   pd[1 + 3*(nlayer)]
#define	sav_g   pd[2 + 3*(nlayer)]
#define	sav_rhs   pd[3 + 3*(nlayer)]

Functions
void	nrn_delete_prop_pool (int type)
static void	extcell_alloc (Prop *)
static void	extcell_init (NrnThread *nt, Memb_list *ml, int type)
static int	_ode_count (int type)
void	extracell_reg_ (void)
void	nrn_update_2d (NrnThread *nt)
static int	nparm ()
void	extnode_free_elements (Extnode *nde)
static void	check_if_extracellular_in_use ()
static void	update_existing_extnode (int old_nlayer)
static void	update_extracellular_reg (int old_nlayer)
void	nlayer_extracellular ()
static void	extnode_alloc_elements (Extnode *nde)
void	extcell_node_create (Node *nd)
void	nrn_extcell_update_param (void)
void	extcell_2d_alloc (Section *sec)
void	nrn_rhs_ext (NrnThread *_nt)
void	nrn_setup_ext (NrnThread *_nt)
void	ext_con_coef (void)
	ForAllSections (sec) if(sec -> pnode[0]->extnode)

Variables
int	cvode_active_
int	nrn_use_daspk_
int	nrn_nlayer_extracellular = EXTRACELLULAR
static const char *	mechanism []
static HocParmLimits	limits []
static HocParmUnits	units []

Macro Definition Documentation

e_extracellular

#define e_extracellular   pd[3*(nlayer)]

Definition at line 84 of file extcelln.cpp.

i_membrane

#define i_membrane   pd[1 + 3*(nlayer)]

Definition at line 86 of file extcelln.cpp.

sav_g

#define sav_g   pd[2 + 3*(nlayer)]

Definition at line 87 of file extcelln.cpp.

sav_rhs

#define sav_rhs   pd[3 + 3*(nlayer)]

Definition at line 88 of file extcelln.cpp.

xc

#define xc   (pd + 2*(nlayer))

Definition at line 83 of file extcelln.cpp.

xg

#define xg   (pd + (nlayer))

Definition at line 82 of file extcelln.cpp.

xraxial

#define xraxial   pd /* From Eion */

Definition at line 81 of file extcelln.cpp.

Function Documentation

_ode_count()

static int _ode_count ( int  type )

static

Definition at line 56 of file extcelln.cpp.

check_if_extracellular_in_use()

static void check_if_extracellular_in_use ( )

static

Definition at line 227 of file extcelln.cpp.

ext_con_coef()

void ext_con_coef

(

void

)

Definition at line 507 of file extcelln.cpp.

extcell_2d_alloc()

void extcell_2d_alloc

(

Section *

sec

)

Definition at line 343 of file extcelln.cpp.

extcell_alloc()

static void extcell_alloc ( Prop *  p )

static

Definition at line 168 of file extcelln.cpp.

extcell_init()

static void extcell_init ( NrnThread *  nt, Memb_list *  ml, int  type  )

static

Definition at line 191 of file extcelln.cpp.

extcell_node_create()

void extcell_node_create

(

Node *

nd

)

Definition at line 303 of file extcelln.cpp.

extnode_alloc_elements()

static void extnode_alloc_elements ( Extnode *  nde )

static

Definition at line 287 of file extcelln.cpp.

extnode_free_elements()

void extnode_free_elements

(

Extnode *

nde

)

Definition at line 211 of file extcelln.cpp.

extracell_reg_()

void extracell_reg_

(

void

)

Definition at line 67 of file extcelln.cpp.

ForAllSections()

ForAllSections

(

sec

)

-> pnode[0]->extnode)

Definition at line 555 of file extcelln.cpp.

nlayer_extracellular()

void nlayer_extracellular

(

)

Definition at line 271 of file extcelln.cpp.

nparm()

static int nparm ( )

static

Definition at line 157 of file extcelln.cpp.

nrn_delete_prop_pool()

void nrn_delete_prop_pool

(

int

type

)

Definition at line 244 of file cxprop.cpp.

nrn_extcell_update_param()

void nrn_extcell_update_param

(

void

)

Definition at line 326 of file extcelln.cpp.

nrn_rhs_ext()

void nrn_rhs_ext

(

NrnThread *

_nt

)

Definition at line 360 of file extcelln.cpp.

nrn_setup_ext()

void nrn_setup_ext

(

NrnThread *

_nt

)

Definition at line 438 of file extcelln.cpp.

nrn_update_2d()

void nrn_update_2d

(

NrnThread *

nt

)

Definition at line 96 of file extcelln.cpp.

update_existing_extnode()

static void update_existing_extnode ( int  old_nlayer )

static

Definition at line 237 of file extcelln.cpp.

update_extracellular_reg()

static void update_extracellular_reg ( int  old_nlayer )

static

Definition at line 248 of file extcelln.cpp.

Variable Documentation

cvode_active_

int cvode_active_

Definition at line 158 of file fadvance.cpp.

limits

HocParmLimits limits[]

static

Initial value:

= {
    "xraxial", 1e-9, 1e15,
    "xg", 0., 1e15,
    "xc", 0., 1e15,
    0,0.,0.
}

Definition at line 33 of file extcelln.cpp.

mechanism

const char* mechanism[]

static

Initial value:

= {
    "0",
    "extracellular",
    "xraxial[N]", "xg[N]", "xc[N]", "e_extracellular", 0,

    "i_membrane",

    0,
    "vext[N]", 0,
}

Definition at line 23 of file extcelln.cpp.

nrn_nlayer_extracellular

int nrn_nlayer_extracellular = EXTRACELLULAR

Definition at line 18 of file extcelln.cpp.

nrn_use_daspk_

int nrn_use_daspk_

Definition at line 70 of file treeset.cpp.

units

HocParmUnits units[]

static

Initial value:

= {
    "xraxial", "MOhm/cm",
    "xg", "S/cm2",
    "xc", "uF/cm2",
    "e_extracellular", "mV",
    "vext", "mV",
    "i_membrane", "mA/cm2",
    0,0
}

Definition at line 40 of file extcelln.cpp.