section.h File Reference

#include "nrnredef.h"
#include "options.h"
#include "hoclist.h"
#include "hocdec.h"
#include <multicore.h>
#include "nrn_ansi.h"

Go to the source code of this file.

Classes
struct	Section
struct	Pt3d
struct	Node
struct	Extnode
struct	Prop
struct	Point_process

Macros
#define	xpop   hoc_xpop
#define	pc   hoc_pc
#define	spop   hoc_spop
#define	execerror   hoc_execerror
#define	NODED(n)   (*((n)->_d))
#define	NODERHS(n)   (*((n)->_rhs))
#define	NODEV(n)   (*((n)->_v))
#define	NODEAREA(n)   ((n)->_area)
#define	NODERINV(n)   ((n)->_rinv)
#define	VEC_A(i)   (_nt->_actual_a[(i)])
#define	VEC_B(i)   (_nt->_actual_b[(i)])
#define	VEC_D(i)   (_nt->_actual_d[(i)])
#define	VEC_RHS(i)   (_nt->_actual_rhs[(i)])
#define	VEC_V(i)   (_nt->_actual_v[(i)])
#define	VEC_AREA(i)   (_nt->_actual_area[(i)])
#define	NODEA(n)   (VEC_A((n)->v_node_index))
#define	NODEB(n)   (VEC_B((n)->v_node_index))
#define	nlayer   (nrn_nlayer_extracellular) /* first (0) layer is extracellular next to membrane */
#define	PROP_PY_INDEX   10
#define	tstopbit   (1 << 15)
#define	tstopset   stoprun |= tstopbit
#define	tstopunset   stoprun &= (~tstopbit)

Typedefs
typedef struct Section	Section
typedef struct Pt3d	Pt3d
typedef struct Node	Node
typedef struct Extnode	Extnode
typedef struct Prop	Prop
typedef struct Point_process	Point_process

Functions
double *	nrn_prop_data_alloc (int type, int count, Prop *p)
Datum *	nrn_prop_datum_alloc (int type, int count, Prop *p)
void	nrn_prop_data_free (int type, double *pd)
void	nrn_prop_datum_free (int type, Datum *ppd)
Section *	chk_access ()
double	nrn_ghk (double, double, double, double)
Section *	sec_alloc ()
void	node_alloc (Section *, short)
double	section_length (Section *)
double	nrn_diameter (Node *)
Node *	nrn_parent_node (Node *)
Section *	nrn_section_alloc ()
void	nrn_section_free (Section *)
int	nrn_is_valid_section_ptr (void *)

Variables
int	use_sparse13
int	use_cachevec
int	secondorder
int	cvode_active_
int	nrn_nlayer_extracellular
int	nrn_global_ncell
hoc_List *	section_list
int	stoprun

Macro Definition Documentation

execerror

#define execerror   hoc_execerror

Definition at line 36 of file section.h.

nlayer

#define nlayer   (nrn_nlayer_extracellular) /* first (0) layer is extracellular next to membrane */

Definition at line 188 of file section.h.

NODEA

#define NODEA

(

n

)

(VEC_A((n)->v_node_index))

Definition at line 124 of file section.h.

NODEAREA

#define NODEAREA

(

n

)

((n)->_area)

Definition at line 116 of file section.h.

NODEB

#define NODEB

(

n

)

(VEC_B((n)->v_node_index))

Definition at line 125 of file section.h.

NODED

#define NODED

(

n

)

(*((n)->_d))

Definition at line 104 of file section.h.

NODERHS

#define NODERHS

(

n

)

(*((n)->_rhs))

Definition at line 105 of file section.h.

NODERINV

#define NODERINV

(

n

)

((n)->_rinv)

Definition at line 117 of file section.h.

NODEV

#define NODEV

(

n

)

(*((n)->_v))

Definition at line 115 of file section.h.

pc

#define pc   hoc_pc

Definition at line 34 of file section.h.

PROP_PY_INDEX

#define PROP_PY_INDEX   10

Definition at line 212 of file section.h.

spop

#define spop

(

void

)

hoc_spop

Definition at line 35 of file section.h.

tstopbit

#define tstopbit   (1 << 15)

Definition at line 325 of file section.h.

tstopset

#define tstopset   stoprun |= tstopbit

Definition at line 326 of file section.h.

tstopunset

#define tstopunset   stoprun &= (~tstopbit)

Definition at line 327 of file section.h.

VEC_A

#define VEC_A

(

i

)

(_nt->_actual_a[(i)])

Definition at line 118 of file section.h.

VEC_AREA

#define VEC_AREA

(

i

)

(_nt->_actual_area[(i)])

Definition at line 123 of file section.h.

VEC_B

#define VEC_B

(

i

)

(_nt->_actual_b[(i)])

Definition at line 119 of file section.h.

VEC_D

#define VEC_D

(

i

)

(_nt->_actual_d[(i)])

Definition at line 120 of file section.h.

VEC_RHS

#define VEC_RHS

(

i

)

(_nt->_actual_rhs[(i)])

Definition at line 121 of file section.h.

VEC_V

#define VEC_V

(

i

)

(_nt->_actual_v[(i)])

Definition at line 122 of file section.h.

xpop

#define xpop

(

void

)

hoc_xpop

Definition at line 33 of file section.h.

Typedef Documentation

Extnode

typedef struct Extnode Extnode

Node

typedef struct Node Node

Point_process

typedef struct Point_process Point_process

Prop

typedef struct Prop Prop

Pt3d

typedef struct Pt3d Pt3d

Section

typedef struct Section Section

Function Documentation

chk_access()

Section* chk_access

(

)

Definition at line 444 of file cabcode.cpp.

node_alloc()

void node_alloc	(	Section *	sec,
		short	nseg
	)

Definition at line 826 of file solve.cpp.

nrn_diameter()

double nrn_diameter

(

Node *

nd

)

Definition at line 432 of file cabcode.cpp.

nrn_ghk()

double nrn_ghk	(	double	v,
		double	ci,
		double	co,
		double	z
	)

Definition at line 347 of file eion.cpp.

nrn_is_valid_section_ptr()

int nrn_is_valid_section_ptr

(

void *

v

)

Definition at line 335 of file cxprop.cpp.

nrn_parent_node()

Node* nrn_parent_node

(

Node *

nd

)

Definition at line 838 of file treeset.cpp.

nrn_prop_data_alloc()

double* nrn_prop_data_alloc	(	int	type,
		int	count,
		Prop *	p
	)

Definition at line 277 of file cxprop.cpp.

nrn_prop_data_free()

void nrn_prop_data_free	(	int	type,
		double *	pd
	)

Definition at line 306 of file cxprop.cpp.

nrn_prop_datum_alloc()

Datum* nrn_prop_datum_alloc	(	int	type,
		int	count,
		Prop *	p
	)

Definition at line 289 of file cxprop.cpp.

nrn_prop_datum_free()

void nrn_prop_datum_free	(	int	type,
		Datum *	ppd
	)

Definition at line 313 of file cxprop.cpp.

nrn_section_alloc()

Section* nrn_section_alloc

(

)

Definition at line 324 of file cxprop.cpp.

nrn_section_free()

void nrn_section_free

(

Section *

s

)

Definition at line 331 of file cxprop.cpp.

sec_alloc()

Section* sec_alloc

(

)

Definition at line 476 of file solve.cpp.

section_length()

double section_length

(

Section *

sec

)

Definition at line 95 of file cabcode.cpp.

Variable Documentation

cvode_active_

int cvode_active_

extern

Definition at line 163 of file fadvance.cpp.

nrn_global_ncell

int nrn_global_ncell

extern

Definition at line 103 of file init.cpp.

nrn_nlayer_extracellular

int nrn_nlayer_extracellular

extern

Definition at line 18 of file extcelln.cpp.

secondorder

int secondorder

extern

Definition at line 96 of file init.cpp.

section_list

hoc_List* section_list

extern

Definition at line 102 of file init.cpp.

stoprun

int stoprun

extern

Definition at line 166 of file fadvance.cpp.

use_cachevec

int use_cachevec

extern

Definition at line 63 of file treeset.cpp.

use_sparse13

int use_sparse13

extern

Definition at line 71 of file treeset.cpp.