nrnpy_nrn.cpp File Reference

#include <nrnpython.h>
#include <structmember.h>
#include <InterViews/resource.h>
#include <nrnoc2iv.h>
#include "nrnpy_utils.h"
#include <cmath>
#include <membfunc.h>
#include <parse.hpp>
#include "nrnpy_nrn.h"

Go to the source code of this file.

Classes
struct	NPySecObj
struct	NPyAllSegOfSecIter
struct	NPySegOfSecIter
struct	NPySegObj
struct	NPyMechOfSegIter
struct	NPyMechObj
struct	NPyVarOfMechIter
struct	NPyRVItr
struct	NPyRangeVar

Macros
#define	M_PI   (3.14159265358979323846)

Functions
void	nrn_pt3dremove (Section *sec, int i0)
void	nrn_pt3dinsert (Section *sec, int i0, double x, double y, double z, double d)
void	nrn_pt3dclear (Section *sec, int req)
void	nrn_pt3dchange1 (Section *sec, int i, double d)
void	nrn_pt3dchange2 (Section *sec, int i, double x, double y, double z, double diam)
void	stor_pt3d (Section *sec, double x, double y, double z, double d)
void	nrn_pt3dstyle1 (Section *sec, double x, double y, double z)
void	nrn_pt3dstyle0 (Section *sec)
void	nrn_area_ri (Section *sec)
void	sec_free (hoc_Item *)
Section *	nrn_noerr_access ()
double *	nrnpy_rangepointer (Section *, Symbol *, double, int *)
PyObject *	nrn_ptr_richcmp (void *self_ptr, void *other_ptr, int op)
int	has_membrane (char *, Section *)
NPySecObj *	newpysechelp (Section *sec)
Section *	nrnpy_newsection (NPySecObj *)
void	simpleconnectsection ()
void	nrn_change_nseg (Section *, int)
double	section_length (Section *)
double	nrn_ra (Section *)
int	can_change_morph (Section *)
void	nrn_diam_change (Section *)
void	nrn_length_change (Section *, double)
void	mech_insert1 (Section *, int)
void	mech_uninsert1 (Section *, Symbol *)
PyObject *	nrn_hocobj_ptr (double *)
int	nrn_is_hocobj_ptr (PyObject *, double *&)
PyObject *	nrnpy_forall (PyObject *self, PyObject *args)
Object *	nrnpy_po2ho (PyObject *)
Object *	nrnpy_pyobject_in_obj (PyObject *)
int	nrnpy_ho_eq_po (Object *, PyObject *)
PyObject *	nrnpy_hoc2pyobject (Object *)
PyObject *	nrnpy_ho2po (Object *)
static void	nrnpy_reg_mech (int)
static int	ob_is_seg (Object *)
static Object *	seg_from_sec_x (Section *, double x)
static Section *	o2sec (Object *)
static void	o2loc (Object *, Section **, double *)
static void	nrnpy_unreg_mech (int)
static char *	pysec_name (Section *)
static Object *	pysec_cell (Section *)
static PyObject *	pysec2cell (NPySecObj *)
static int	pysec_cell_equals (Section *, Object *)
static void	remake_pmech_types ()
void	nrnpy_sec_referr ()
static int	NPySecObj_contains (PyObject *sec, PyObject *obj)
static void	NPySecObj_dealloc (NPySecObj *self)
static void	NPyAllSegOfSecIter_dealloc (NPyAllSegOfSecIter *self)
static void	NPySegOfSecIter_dealloc (NPySegOfSecIter *self)
static void	NPySegObj_dealloc (NPySegObj *self)
static void	NPyRangeVar_dealloc (NPyRangeVar *self)
static void	NPyMechObj_dealloc (NPyMechObj *self)
static void	NPyMechOfSegIter_dealloc (NPyMechOfSegIter *self)
static void	NPyVarOfMechIter_dealloc (NPyVarOfMechIter *self)
static int	NPySecObj_init (NPySecObj *self, PyObject *args, PyObject *kwds)
static int	NPyAllSegOfSecIter_init (NPyAllSegOfSecIter *self, PyObject *args, PyObject *kwds)
PyObject *	NPySecObj_new (PyTypeObject *type, PyObject *args, PyObject *kwds)
PyObject *	NPyAllSegOfSecIter_new (PyTypeObject *type, PyObject *args, PyObject *kwds)
PyObject *	nrnpy_newsecobj (PyObject *self, PyObject *args, PyObject *kwds)
static PyObject *	NPySegObj_new (PyTypeObject *type, PyObject *args, PyObject *kwds)
static PyObject *	NPyMechObj_new (PyTypeObject *type, PyObject *args, PyObject *kwds)
static PyObject *	NPyRangeVar_new (PyTypeObject *type, PyObject *args, PyObject *kwds)
static int	NPySegObj_init (NPySegObj *self, PyObject *args, PyObject *kwds)
static void	o2loc2 (Object *o, Section **psec, double *px)
static int	NPyMechObj_init (NPyMechObj *self, PyObject *args, PyObject *kwds)
static int	NPyRangeVar_init (NPyRangeVar *self, PyObject *args, PyObject *kwds)
static PyObject *	NPySecObj_name (NPySecObj *self)
static PyObject *	NPySecObj_n3d (NPySecObj *self)
static PyObject *	NPySecObj_pt3dremove (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_pt3dclear (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_pt3dchange (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_pt3dinsert (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_pt3dadd (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_pt3dstyle (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_x3d (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_y3d (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_z3d (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_arc3d (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_diam3d (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_spine3d (NPySecObj *self, PyObject *args)
static PyObject *	pysec_repr (PyObject *p)
static PyObject *	pyseg_repr (PyObject *p)
static PyObject *	hoc_internal_name (NPySecObj *self)
static PyObject *	nrnpy_set_psection (PyObject *self, PyObject *args)
static PyObject *	NPySecObj_psection (NPySecObj *self)
static PyObject *	is_pysec (NPySecObj *self)
static PyObject *	newpyseghelp (Section *sec, double x)
static PyObject *	pysec_disconnect (NPySecObj *self)
static PyObject *	pysec_parentseg (NPySecObj *self)
static PyObject *	pysec_trueparentseg (NPySecObj *self)
static PyObject *	pysec_orientation (NPySecObj *self)
static bool	lappendsec (PyObject *const sl, Section *const s)
static PyObject *	pysec_children1 (PyObject *const sl, Section *const sec)
static PyObject *	pysec_children (NPySecObj *const self)
static PyObject *	pysec_subtree1 (PyObject *const sl, Section *const sec)
static PyObject *	pysec_subtree (NPySecObj *const self)
static PyObject *	pysec_wholetree (NPySecObj *const self)
static long	pysec_hash (PyObject *self)
static long	pyseg_hash (PyObject *self)
static PyObject *	pyseg_richcmp (NPySegObj *self, PyObject *other, int op)
static PyObject *	pysec_richcmp (NPySecObj *self, PyObject *other, int op)
static PyObject *	pysec_same (NPySecObj *self, PyObject *args)
static PyObject *	NPyMechObj_name (NPyMechObj *self)
static PyObject *	NPyMechObj_is_ion (NPyMechObj *self)
static PyObject *	NPyMechObj_segment (NPyMechObj *self)
static PyObject *	pymech_repr (PyObject *p)
static PyObject *	NPyRangeVar_name (NPyRangeVar *self)
static PyObject *	NPyRangeVar_mech (NPyRangeVar *self)
static PyObject *	NPySecObj_connect (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_insert (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_uninsert (NPySecObj *self, PyObject *args)
static PyObject *	NPySecObj_has_membrane (NPySecObj *self, PyObject *args)
PyObject *	nrnpy_pushsec (PyObject *sec)
static PyObject *	NPySecObj_push (NPySecObj *self, PyObject *args)
static PyObject *	seg_of_section_iter (NPySecObj *self)
static PyObject *	allseg (NPySecObj *self)
static PyObject *	allseg_of_sec_iter (NPyAllSegOfSecIter *self)
static PyObject *	allseg_of_sec_next (NPyAllSegOfSecIter *self)
static PyObject *	seg_of_sec_next (NPySegOfSecIter *self)
static PyObject *	seg_point_processes (NPySegObj *self)
static PyObject *	node_index1 (NPySegObj *self)
static PyObject *	seg_area (NPySegObj *self)
static double	scaled_frustum_volume (double length, double d0, double d1)
static double	interpolate (double x0, double x1, double y0, double y1, double xnew)
static int	arg_bisect_arc3d (Section *sec, int npt3d, double x)
static PyObject *	seg_volume (NPySegObj *self)
static PyObject *	seg_ri (NPySegObj *self)
static Prop *	mech_of_segment_prop (Prop *p)
static PyObject *	mech_of_segment_iter (NPySegObj *self)
static Object **	pp_get_segment (void *vptr)
static void	rv_noexist (Section *sec, const char *n, double x, int err)
static NPyRangeVar *	rvnew (Symbol *sym, NPySecObj *sec, double x)
static PyObject *	section_getattro (NPySecObj *self, PyObject *pyname)
static int	section_setattro (NPySecObj *self, PyObject *pyname, PyObject *value)
static PyObject *	mech_of_seg_next (NPyMechOfSegIter *self)
static PyObject *	var_of_mech_iter (NPyMechObj *self)
static PyObject *	var_of_mech_next (NPyVarOfMechIter *self)
static PyObject *	segment_getattro (NPySegObj *self, PyObject *pyname)
int	nrn_pointer_assign (Prop *prop, Symbol *sym, PyObject *value)
static int	segment_setattro (NPySegObj *self, PyObject *pyname, PyObject *value)
static bool	striptrail (char *buf, int sz, const char *n, const char *m)
static PyObject *	mech_getattro (NPyMechObj *self, PyObject *pyname)
static int	mech_setattro (NPyMechObj *self, PyObject *pyname, PyObject *value)
double **	nrnpy_setpointer_helper (PyObject *pyname, PyObject *mech)
static PyObject *	NPySecObj_call (NPySecObj *self, PyObject *args)
static Py_ssize_t	rv_len (PyObject *self)
static PyObject *	rv_getitem (PyObject *self, Py_ssize_t ix)
static int	rv_setitem (PyObject *self, Py_ssize_t ix, PyObject *value)
static char *	cpstr (const char *s)
PyObject *	nrnpy_cas (PyObject *self, PyObject *args)
static void	rangevars_add (Symbol *sym)
PyObject *	nrnpy_nrn (void)

Variables
Symlist *	hoc_built_in_symlist
PyTypeObject *	psection_type
static PyTypeObject *	pallseg_of_sec_iter_type
static PyTypeObject *	pseg_of_sec_iter_type
static PyTypeObject *	psegment_type
static PyTypeObject *	pmech_of_seg_iter_generic_type
static PyTypeObject *	pmech_generic_type
static PyTypeObject *	pvar_of_mech_iter_generic_type
static PyTypeObject *	range_type
PyObject *	pmech_types
PyObject *	rangevars_
PyTypeObject *	hocobject_type
short *	nrn_is_artificial_
cTemplate **	nrn_pnt_template_
int	diam_changed
Symbol *	nrnpy_pyobj_sym_
void(*	nrnpy_reg_mech_p_ )(int)
int(*	nrnpy_ob_is_seg )(Object *)
Object *(*	nrnpy_seg_from_sec_x )(Section *, double x)
Section *(*	nrnpy_o2sec_p_ )(Object *)
void(*	nrnpy_o2loc_p_ )(Object *, Section **, double *)
void(*	nrnpy_o2loc2_p_ )(Object *, Section **, double *)
char *(*	nrnpy_pysec_name_p_ )(Section *)
Object *(*	nrnpy_pysec_cell_p_ )(Section *)
int(*	nrnpy_pysec_cell_equals_p_ )(Section *, Object *)
static PyObject *	nrnpy_psection
static PyMethodDef	NPySecObj_methods []
static PyMethodDef	NPySegObj_methods []
static PyMemberDef	NPySegObj_members []
static PyMethodDef	NPyMechObj_methods []
static PyMethodDef	NPyRangeVar_methods []
static PyMemberDef	NPyMechObj_members [] = {{NULL}}
static PyMethodDef	nrnpy_methods []
static PyObject *	nrnmodule_

Macro Definition Documentation

M_PI

#define M_PI   (3.14159265358979323846)

Definition at line 9 of file nrnpy_nrn.cpp.

Function Documentation

allseg()

static PyObject* allseg ( NPySecObj *  self )

static

Definition at line 1293 of file nrnpy_nrn.cpp.

allseg_of_sec_iter()

static PyObject* allseg_of_sec_iter ( NPyAllSegOfSecIter *  self )

static

Definition at line 1303 of file nrnpy_nrn.cpp.

allseg_of_sec_next()

static PyObject* allseg_of_sec_next ( NPyAllSegOfSecIter *  self )

static

Definition at line 1309 of file nrnpy_nrn.cpp.

arg_bisect_arc3d()

static int arg_bisect_arc3d ( Section *  sec, int  npt3d, double  x  )

static

Definition at line 1410 of file nrnpy_nrn.cpp.

can_change_morph()

int can_change_morph

(

Section *

sec

)

Definition at line 1258 of file treeset.cpp.

cpstr()

static char* cpstr ( const char *  s )

static

Definition at line 2412 of file nrnpy_nrn.cpp.

has_membrane()

int has_membrane	(	char *	mechanism_name,
		Section *	sec
	)

Definition at line 2236 of file cabcode.cpp.

hoc_internal_name()

static PyObject* hoc_internal_name ( NPySecObj *  self )

static

Definition at line 818 of file nrnpy_nrn.cpp.

interpolate()

static double interpolate ( double  x0, double  x1, double  y0, double  y1, double  xnew  )

inlinestatic

Definition at line 1399 of file nrnpy_nrn.cpp.

is_pysec()

static PyObject* is_pysec ( NPySecObj *  self )

static

Definition at line 857 of file nrnpy_nrn.cpp.

lappendsec()

static bool lappendsec ( PyObject *const  sl, Section *const  s  )

static

Definition at line 942 of file nrnpy_nrn.cpp.

mech_getattro()

static PyObject* mech_getattro ( NPyMechObj *  self, PyObject *  pyname  )

static

Definition at line 2019 of file nrnpy_nrn.cpp.

mech_insert1()

void mech_insert1	(	Section *	sec,
		int	type
	)

Definition at line 849 of file cabcode.cpp.

mech_of_seg_next()

static PyObject* mech_of_seg_next ( NPyMechOfSegIter *  self )

static

Definition at line 1736 of file nrnpy_nrn.cpp.

mech_of_segment_iter()

static PyObject* mech_of_segment_iter ( NPySegObj *  self )

static

Definition at line 1514 of file nrnpy_nrn.cpp.

mech_of_segment_prop()

static Prop* mech_of_segment_prop ( Prop *  p )

static

Definition at line 1497 of file nrnpy_nrn.cpp.

mech_setattro()

static int mech_setattro ( NPyMechObj *  self, PyObject *  pyname, PyObject *  value  )

static

Definition at line 2086 of file nrnpy_nrn.cpp.

mech_uninsert1()

void mech_uninsert1	(	Section *	sec,
		Symbol *	s
	)

Definition at line 916 of file cabcode.cpp.

newpysechelp()

NPySecObj* newpysechelp

(

Section *

sec

)

Definition at line 865 of file nrnpy_nrn.cpp.

newpyseghelp()

static PyObject* newpyseghelp ( Section *  sec, double  x  )

static

Definition at line 884 of file nrnpy_nrn.cpp.

node_index1()

static PyObject* node_index1 ( NPySegObj *  self )

static

Definition at line 1370 of file nrnpy_nrn.cpp.

NPyAllSegOfSecIter_dealloc()

static void NPyAllSegOfSecIter_dealloc ( NPyAllSegOfSecIter *  self )

static

Definition at line 225 of file nrnpy_nrn.cpp.

NPyAllSegOfSecIter_init()

static int NPyAllSegOfSecIter_init ( NPyAllSegOfSecIter *  self, PyObject *  args, PyObject *  kwds  )

static

Definition at line 333 of file nrnpy_nrn.cpp.

NPyAllSegOfSecIter_new()

PyObject* NPyAllSegOfSecIter_new	(	PyTypeObject *	type,
		PyObject *	args,
		PyObject *	kwds
	)

Definition at line 360 of file nrnpy_nrn.cpp.

NPyMechObj_dealloc()

static void NPyMechObj_dealloc ( NPyMechObj *  self )

static

Definition at line 249 of file nrnpy_nrn.cpp.

NPyMechObj_init()

static int NPyMechObj_init ( NPyMechObj *  self, PyObject *  args, PyObject *  kwds  )

static

Definition at line 538 of file nrnpy_nrn.cpp.

NPyMechObj_is_ion()

static PyObject* NPyMechObj_is_ion ( NPyMechObj *  self )

static

Definition at line 1083 of file nrnpy_nrn.cpp.

NPyMechObj_name()

static PyObject* NPyMechObj_name ( NPyMechObj *  self )

static

Definition at line 1074 of file nrnpy_nrn.cpp.

NPyMechObj_new()

static PyObject* NPyMechObj_new ( PyTypeObject *  type, PyObject *  args, PyObject *  kwds  )

static

Definition at line 401 of file nrnpy_nrn.cpp.

NPyMechObj_segment()

static PyObject* NPyMechObj_segment ( NPyMechObj *  self )

static

Definition at line 1091 of file nrnpy_nrn.cpp.

NPyMechOfSegIter_dealloc()

static void NPyMechOfSegIter_dealloc ( NPyMechOfSegIter *  self )

static

Definition at line 255 of file nrnpy_nrn.cpp.

NPyRangeVar_dealloc()

static void NPyRangeVar_dealloc ( NPyRangeVar *  self )

static

Definition at line 243 of file nrnpy_nrn.cpp.

NPyRangeVar_init()

static int NPyRangeVar_init ( NPyRangeVar *  self, PyObject *  args, PyObject *  kwds  )

static

Definition at line 551 of file nrnpy_nrn.cpp.

NPyRangeVar_mech()

static PyObject* NPyRangeVar_mech ( NPyRangeVar *  self )

static

Definition at line 1127 of file nrnpy_nrn.cpp.

NPyRangeVar_name()

static PyObject* NPyRangeVar_name ( NPyRangeVar *  self )

static

Definition at line 1110 of file nrnpy_nrn.cpp.

NPyRangeVar_new()

static PyObject* NPyRangeVar_new ( PyTypeObject *  type, PyObject *  args, PyObject *  kwds  )

static

Definition at line 417 of file nrnpy_nrn.cpp.

NPySecObj_arc3d()

static PyObject* NPySecObj_arc3d ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 744 of file nrnpy_nrn.cpp.

NPySecObj_call()

static PyObject* NPySecObj_call ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 2161 of file nrnpy_nrn.cpp.

NPySecObj_connect()

static PyObject* NPySecObj_connect ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 1137 of file nrnpy_nrn.cpp.

NPySecObj_contains()

static int NPySecObj_contains ( PyObject *  sec, PyObject *  obj  )

static

Definition at line 173 of file nrnpy_nrn.cpp.

NPySecObj_dealloc()

static void NPySecObj_dealloc ( NPySecObj *  self )

static

Definition at line 205 of file nrnpy_nrn.cpp.

NPySecObj_diam3d()

static PyObject* NPySecObj_diam3d ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 761 of file nrnpy_nrn.cpp.

NPySecObj_has_membrane()

static PyObject* NPySecObj_has_membrane ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 1251 of file nrnpy_nrn.cpp.

NPySecObj_init()

static int NPySecObj_init ( NPySecObj *  self, PyObject *  args, PyObject *  kwds  )

static

Definition at line 277 of file nrnpy_nrn.cpp.

NPySecObj_insert()

static PyObject* NPySecObj_insert ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 1182 of file nrnpy_nrn.cpp.

NPySecObj_n3d()

static PyObject* NPySecObj_n3d ( NPySecObj *  self )

static

Definition at line 561 of file nrnpy_nrn.cpp.

NPySecObj_name()

static PyObject* NPySecObj_name ( NPySecObj *  self )

static

Definition at line 555 of file nrnpy_nrn.cpp.

NPySecObj_new()

PyObject* NPySecObj_new	(	PyTypeObject *	type,
		PyObject *	args,
		PyObject *	kwds
	)

Definition at line 347 of file nrnpy_nrn.cpp.

NPySecObj_psection()

static PyObject* NPySecObj_psection ( NPySecObj *  self )

static

Definition at line 845 of file nrnpy_nrn.cpp.

NPySecObj_pt3dadd()

static PyObject* NPySecObj_pt3dadd ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 647 of file nrnpy_nrn.cpp.

NPySecObj_pt3dchange()

static PyObject* NPySecObj_pt3dchange ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 600 of file nrnpy_nrn.cpp.

NPySecObj_pt3dclear()

static PyObject* NPySecObj_pt3dclear ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 582 of file nrnpy_nrn.cpp.

NPySecObj_pt3dinsert()

static PyObject* NPySecObj_pt3dinsert ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 631 of file nrnpy_nrn.cpp.

NPySecObj_pt3dremove()

static PyObject* NPySecObj_pt3dremove ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 566 of file nrnpy_nrn.cpp.

NPySecObj_pt3dstyle()

static PyObject* NPySecObj_pt3dstyle ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 659 of file nrnpy_nrn.cpp.

NPySecObj_push()

static PyObject* NPySecObj_push ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 1271 of file nrnpy_nrn.cpp.

NPySecObj_spine3d()

static PyObject* NPySecObj_spine3d ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 777 of file nrnpy_nrn.cpp.

NPySecObj_uninsert()

static PyObject* NPySecObj_uninsert ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 1227 of file nrnpy_nrn.cpp.

NPySecObj_x3d()

static PyObject* NPySecObj_x3d ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 696 of file nrnpy_nrn.cpp.

NPySecObj_y3d()

static PyObject* NPySecObj_y3d ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 712 of file nrnpy_nrn.cpp.

NPySecObj_z3d()

static PyObject* NPySecObj_z3d ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 728 of file nrnpy_nrn.cpp.

NPySegObj_dealloc()

static void NPySegObj_dealloc ( NPySegObj *  self )

static

Definition at line 237 of file nrnpy_nrn.cpp.

NPySegObj_init()

static int NPySegObj_init ( NPySegObj *  self, PyObject *  args, PyObject *  kwds  )

static

Definition at line 429 of file nrnpy_nrn.cpp.

NPySegObj_new()

static PyObject* NPySegObj_new ( PyTypeObject *  type, PyObject *  args, PyObject *  kwds  )

static

Definition at line 377 of file nrnpy_nrn.cpp.

NPySegOfSecIter_dealloc()

static void NPySegOfSecIter_dealloc ( NPySegOfSecIter *  self )

static

Definition at line 231 of file nrnpy_nrn.cpp.

NPyVarOfMechIter_dealloc()

static void NPyVarOfMechIter_dealloc ( NPyVarOfMechIter *  self )

static

Definition at line 261 of file nrnpy_nrn.cpp.

nrn_area_ri()

void nrn_area_ri

(

Section *

sec

)

Definition at line 779 of file treeset.cpp.

nrn_change_nseg()

void nrn_change_nseg	(	Section *	sec,
		int	n
	)

Definition at line 1557 of file cabcode.cpp.

nrn_diam_change()

void nrn_diam_change

(

Section *

sec

)

Definition at line 1215 of file treeset.cpp.

nrn_hocobj_ptr()

PyObject* nrn_hocobj_ptr

(

double *

pd

)

Definition at line 870 of file nrnpy_hoc.cpp.

nrn_is_hocobj_ptr()

int nrn_is_hocobj_ptr	(	PyObject *	po,
		double *&	pd
	)

Definition at line 878 of file nrnpy_hoc.cpp.

nrn_length_change()

void nrn_length_change	(	Section *	sec,
		double	d
	)

Definition at line 1235 of file treeset.cpp.

nrn_noerr_access()

Section* nrn_noerr_access

(

)

Definition at line 472 of file cabcode.cpp.

nrn_pointer_assign()

int nrn_pointer_assign	(	Prop *	prop,
		Symbol *	sym,
		PyObject *	value
	)

Definition at line 1905 of file nrnpy_nrn.cpp.

nrn_pt3dchange1()

void nrn_pt3dchange1	(	Section *	sec,
		int	i,
		double	d
	)

Definition at line 1163 of file treeset.cpp.

nrn_pt3dchange2()

void nrn_pt3dchange2	(	Section *	sec,
		int	i,
		double	x,
		double	y,
		double	z,
		double	diam
	)

Definition at line 1170 of file treeset.cpp.

nrn_pt3dclear()

void nrn_pt3dclear	(	Section *	sec,
		int	req
	)

Definition at line 1117 of file treeset.cpp.

nrn_pt3dinsert()

void nrn_pt3dinsert	(	Section *	sec,
		int	i0,
		double	x,
		double	y,
		double	z,
		double	d
	)

Definition at line 1134 of file treeset.cpp.

nrn_pt3dremove()

void nrn_pt3dremove	(	Section *	sec,
		int	i0
	)

Definition at line 1191 of file treeset.cpp.

nrn_pt3dstyle0()

void nrn_pt3dstyle0

(

Section *

sec

)

Definition at line 1006 of file treeset.cpp.

nrn_pt3dstyle1()

void nrn_pt3dstyle1	(	Section *	sec,
		double	x,
		double	y,
		double	z
	)

Definition at line 1015 of file treeset.cpp.

nrn_ptr_richcmp()

PyObject* nrn_ptr_richcmp	(	void *	self_ptr,
		void *	other_ptr,
		int	op
	)

Definition at line 2107 of file nrnpy_hoc.cpp.

nrn_ra()

double nrn_ra

(

Section *

sec

)

Definition at line 403 of file cabcode.cpp.

nrnpy_cas()

PyObject* nrnpy_cas	(	PyObject *	self,
		PyObject *	args
	)

Definition at line 2448 of file nrnpy_nrn.cpp.

nrnpy_forall()

PyObject* nrnpy_forall	(	PyObject *	self,
		PyObject *	args
	)

Definition at line 1587 of file nrnpy_hoc.cpp.

nrnpy_ho2po()

PyObject* nrnpy_ho2po

(

Object *

o

)

Definition at line 499 of file nrnpy_hoc.cpp.

nrnpy_ho_eq_po()

int nrnpy_ho_eq_po	(	Object *	ho,
		PyObject *	po
	)

Definition at line 182 of file nrnpy_p2h.cpp.

nrnpy_hoc2pyobject()

PyObject* nrnpy_hoc2pyobject

(

Object *

ho

)

Definition at line 196 of file nrnpy_p2h.cpp.

nrnpy_newsecobj()

PyObject* nrnpy_newsecobj	(	PyObject *	self,
		PyObject *	args,
		PyObject *	kwds
	)

Definition at line 373 of file nrnpy_nrn.cpp.

nrnpy_newsection()

Section* nrnpy_newsection

(

NPySecObj *

)

nrnpy_nrn()

PyObject* nrnpy_nrn

(

void

)

Definition at line 2481 of file nrnpy_nrn.cpp.

nrnpy_po2ho()

Object* nrnpy_po2ho

(

PyObject *

po

)

Definition at line 520 of file nrnpy_hoc.cpp.

nrnpy_pushsec()

PyObject* nrnpy_pushsec

(

PyObject *

sec

)

Definition at line 1263 of file nrnpy_nrn.cpp.

nrnpy_pyobject_in_obj()

Object* nrnpy_pyobject_in_obj

(

PyObject *

po

)

Definition at line 210 of file nrnpy_p2h.cpp.

nrnpy_rangepointer()

double* nrnpy_rangepointer	(	Section *	sec,
		Symbol *	s,
		double	d,
		int *	err
	)

Definition at line 1375 of file cabcode.cpp.

nrnpy_reg_mech()

void nrnpy_reg_mech ( int  type )

static

Definition at line 2590 of file nrnpy_nrn.cpp.

nrnpy_sec_referr()

void nrnpy_sec_referr

(

)

Definition at line 135 of file nrnpy_nrn.cpp.

nrnpy_set_psection()

static PyObject* nrnpy_set_psection ( PyObject *  self, PyObject *  args  )

static

Definition at line 827 of file nrnpy_nrn.cpp.

nrnpy_setpointer_helper()

double** nrnpy_setpointer_helper	(	PyObject *	pyname,
		PyObject *	mech
	)

Definition at line 2141 of file nrnpy_nrn.cpp.

nrnpy_unreg_mech()

void nrnpy_unreg_mech ( int  type )

static

Definition at line 2627 of file nrnpy_nrn.cpp.

o2loc()

static void o2loc ( Object *  o, Section **  psec, double *  px  )

static

Definition at line 475 of file nrnpy_nrn.cpp.

o2loc2()

static void o2loc2 ( Object *  o, Section **  psec, double *  px  )

static

Definition at line 492 of file nrnpy_nrn.cpp.

o2sec()

static Section * o2sec ( Object *  o )

static

Definition at line 463 of file nrnpy_nrn.cpp.

ob_is_seg()

static int ob_is_seg ( Object *  o )

static

Definition at line 452 of file nrnpy_nrn.cpp.

pp_get_segment()

static Object** pp_get_segment ( void *  vptr )

static

Definition at line 1551 of file nrnpy_nrn.cpp.

pymech_repr()

static PyObject* pymech_repr ( PyObject *  p )

static

Definition at line 1101 of file nrnpy_nrn.cpp.

pysec2cell()

static PyObject * pysec2cell ( NPySecObj *  self )

static

Definition at line 1008 of file nrnpy_nrn.cpp.

pysec_cell()

static Object * pysec_cell ( Section *  sec )

static

Definition at line 156 of file nrnpy_nrn.cpp.

pysec_cell_equals()

static int pysec_cell_equals ( Section *  sec, Object *  obj  )

static

Definition at line 188 of file nrnpy_nrn.cpp.

pysec_children()

static PyObject* pysec_children ( NPySecObj *const  self )

static

Definition at line 963 of file nrnpy_nrn.cpp.

pysec_children1()

static PyObject* pysec_children1 ( PyObject *const  sl, Section *const  sec  )

static

Definition at line 954 of file nrnpy_nrn.cpp.

pysec_disconnect()

static PyObject* pysec_disconnect ( NPySecObj *  self )

static

Definition at line 894 of file nrnpy_nrn.cpp.

pysec_hash()

static long pysec_hash ( PyObject *  self )

static

Definition at line 1022 of file nrnpy_nrn.cpp.

pysec_name()

static char * pysec_name ( Section *  sec )

static

Definition at line 139 of file nrnpy_nrn.cpp.

pysec_orientation()

static PyObject* pysec_orientation ( NPySecObj *  self )

static

Definition at line 936 of file nrnpy_nrn.cpp.

pysec_parentseg()

static PyObject* pysec_parentseg ( NPySecObj *  self )

static

Definition at line 901 of file nrnpy_nrn.cpp.

pysec_repr()

static PyObject* pysec_repr ( PyObject *  p )

static

Definition at line 797 of file nrnpy_nrn.cpp.

pysec_richcmp()

static PyObject* pysec_richcmp ( NPySecObj *  self, PyObject *  other, int  op  )

static

Definition at line 1044 of file nrnpy_nrn.cpp.

pysec_same()

static PyObject* pysec_same ( NPySecObj *  self, PyObject *  args  )

static

Definition at line 1062 of file nrnpy_nrn.cpp.

pysec_subtree()

static PyObject* pysec_subtree ( NPySecObj *const  self )

static

Definition at line 985 of file nrnpy_nrn.cpp.

pysec_subtree1()

static PyObject* pysec_subtree1 ( PyObject *const  sl, Section *const  sec  )

static

Definition at line 973 of file nrnpy_nrn.cpp.

pysec_trueparentseg()

static PyObject* pysec_trueparentseg ( NPySecObj *  self )

static

Definition at line 912 of file nrnpy_nrn.cpp.

pysec_wholetree()

static PyObject* pysec_wholetree ( NPySecObj *const  self )

static

Definition at line 995 of file nrnpy_nrn.cpp.

pyseg_hash()

static long pyseg_hash ( PyObject *  self )

static

Definition at line 1026 of file nrnpy_nrn.cpp.

pyseg_repr()

static PyObject* pyseg_repr ( PyObject *  p )

static

Definition at line 805 of file nrnpy_nrn.cpp.

pyseg_richcmp()

static PyObject* pyseg_richcmp ( NPySegObj *  self, PyObject *  other, int  op  )

static

Definition at line 1031 of file nrnpy_nrn.cpp.

rangevars_add()

static void rangevars_add ( Symbol *  sym )

static

Definition at line 2471 of file nrnpy_nrn.cpp.

remake_pmech_types()

void remake_pmech_types ( )

static

Definition at line 2574 of file nrnpy_nrn.cpp.

rv_getitem()

static PyObject* rv_getitem ( PyObject *  self, Py_ssize_t  ix  )

static

Definition at line 2180 of file nrnpy_nrn.cpp.

rv_len()

static Py_ssize_t rv_len ( PyObject *  self )

static

Definition at line 2171 of file nrnpy_nrn.cpp.

rv_noexist()

static void rv_noexist ( Section *  sec, const char *  n, double  x, int  err  )

static

Definition at line 1568 of file nrnpy_nrn.cpp.

rv_setitem()

static int rv_setitem ( PyObject *  self, Py_ssize_t  ix, PyObject *  value  )

static

Definition at line 2207 of file nrnpy_nrn.cpp.

rvnew()

static NPyRangeVar* rvnew ( Symbol *  sym, NPySecObj *  sec, double  x  )

static

Definition at line 1580 of file nrnpy_nrn.cpp.

scaled_frustum_volume()

static double scaled_frustum_volume ( double  length, double  d0, double  d1  )

inlinestatic

Definition at line 1394 of file nrnpy_nrn.cpp.

sec_free()

void sec_free

(

hoc_Item *

secitem

)

Definition at line 521 of file solve.cpp.

section_getattro()

static PyObject* section_getattro ( NPySecObj *  self, PyObject *  pyname  )

static

Definition at line 1593 of file nrnpy_nrn.cpp.

section_length()

double section_length

(

Section *

sec

)

Definition at line 387 of file cabcode.cpp.

section_setattro()

static int section_setattro ( NPySecObj *  self, PyObject *  pyname, PyObject *  value  )

static

Definition at line 1650 of file nrnpy_nrn.cpp.

seg_area()

static PyObject* seg_area ( NPySegObj *  self )

static

Definition at line 1378 of file nrnpy_nrn.cpp.

seg_from_sec_x()

static Object * seg_from_sec_x ( Section *  sec, double  x  )

static

Definition at line 1530 of file nrnpy_nrn.cpp.

seg_of_sec_next()

static PyObject* seg_of_sec_next ( NPySegOfSecIter *  self )

static

Definition at line 1334 of file nrnpy_nrn.cpp.

seg_of_section_iter()

static PyObject* seg_of_section_iter ( NPySecObj *  self )

static

Definition at line 1278 of file nrnpy_nrn.cpp.

seg_point_processes()

static PyObject* seg_point_processes ( NPySegObj *  self )

static

Definition at line 1353 of file nrnpy_nrn.cpp.

seg_ri()

static PyObject* seg_ri ( NPySegObj *  self )

static

Definition at line 1482 of file nrnpy_nrn.cpp.

seg_volume()

static PyObject* seg_volume ( NPySegObj *  self )

static

Definition at line 1426 of file nrnpy_nrn.cpp.

segment_getattro()

static PyObject* segment_getattro ( NPySegObj *  self, PyObject *  pyname  )

static

Definition at line 1788 of file nrnpy_nrn.cpp.

segment_setattro()

static int segment_setattro ( NPySegObj *  self, PyObject *  pyname, PyObject *  value  )

static

Definition at line 1925 of file nrnpy_nrn.cpp.

simpleconnectsection()

void simpleconnectsection

(

)

Definition at line 664 of file cabcode.cpp.

stor_pt3d()

void stor_pt3d	(	Section *	sec,
		double	x,
		double	y,
		double	z,
		double	d
	)

Definition at line 1362 of file treeset.cpp.

striptrail()

static bool striptrail ( char *  buf, int  sz, const char *  n, const char *  m  )

static

Definition at line 2004 of file nrnpy_nrn.cpp.

var_of_mech_iter()

static PyObject* var_of_mech_iter ( NPyMechObj *  self )

static

Definition at line 1753 of file nrnpy_nrn.cpp.

var_of_mech_next()

static PyObject* var_of_mech_next ( NPyVarOfMechIter *  self )

static

Definition at line 1772 of file nrnpy_nrn.cpp.

Variable Documentation

diam_changed

int diam_changed

extern

Definition at line 23 of file cabcode.cpp.

hoc_built_in_symlist

Symlist* hoc_built_in_symlist

extern

Definition at line 76 of file ivocmac.cpp.

hocobject_type

PyTypeObject* hocobject_type

extern

Definition at line 159 of file nrnpy_hoc.cpp.

NPyMechObj_members

PyMemberDef NPyMechObj_members[] = {{NULL}}

static

Definition at line 2446 of file nrnpy_nrn.cpp.

NPyMechObj_methods

PyMethodDef NPyMechObj_methods[]

static

Initial value:

= {
    {"name",
     (PyCFunction) NPyMechObj_name,
     METH_NOARGS,
     "Mechanism name (same as hoc suffix for density mechanism)"},
    {"is_ion", (PyCFunction) NPyMechObj_is_ion, METH_NOARGS, "Returns True if an ion mechanism"},
    {"segment",
     (PyCFunction) NPyMechObj_segment,
     METH_NOARGS,
     "Returns the segment of the Mechanism instance"},
    {NULL}}

Definition at line 2426 of file nrnpy_nrn.cpp.

NPyRangeVar_methods

PyMethodDef NPyRangeVar_methods[]

static

Initial value:

= {
    {"name", (PyCFunction) NPyRangeVar_name, METH_NOARGS, "Range variable name name"},
    {"mech",
     (PyCFunction) NPyRangeVar_mech,
     METH_NOARGS,
     "Returns nrn.Mechanism of the  RangeVariable instance"},
    {NULL}}

Definition at line 2438 of file nrnpy_nrn.cpp.

NPySecObj_methods

PyMethodDef NPySecObj_methods[]

static

Definition at line 2248 of file nrnpy_nrn.cpp.

NPySegObj_members

PyMemberDef NPySegObj_members[]

static

Initial value:

= {
    {cpstr("x"),
     T_DOUBLE,
     offsetof(NPySegObj, x_),
     0,
     cpstr("location in the section (segment containing x)")},
    {cpstr("sec"), T_OBJECT_EX, offsetof(NPySegObj, pysec_), 0, cpstr("Section")},
    {NULL}}

Definition at line 2417 of file nrnpy_nrn.cpp.

NPySegObj_methods

PyMethodDef NPySegObj_methods[]

static

Initial value:

= {
    {"point_processes",
     (PyCFunction) seg_point_processes,
     METH_NOARGS,
     "seg.point_processes() returns list of POINT_PROCESS instances in the "
     "segment."},
    {"node_index",
     (PyCFunction) node_index1,
     METH_NOARGS,
     "seg.node_index() returns index of v, rhs, etc. in the _actual arrays of "
     "the appropriate NrnThread."},
    {"area",
     (PyCFunction) seg_area,
     METH_NOARGS,
     "Segment area (um2) (same as h.area(sec(x), sec=sec))"},
    {"ri",
     (PyCFunction) seg_ri,
     METH_NOARGS,
     "Segment resistance to parent segment (Megohms) (same as h.ri(sec(x), "
     "sec=sec))"},
    {"volume", (PyCFunction) seg_volume, METH_NOARGS, "Segment volume (um3)"},
    {NULL}}

Definition at line 2384 of file nrnpy_nrn.cpp.

nrn_is_artificial_

short* nrn_is_artificial_

extern

Definition at line 193 of file init.cpp.

nrn_pnt_template_

cTemplate** nrn_pnt_template_

extern

Definition at line 131 of file init.cpp.

nrnmodule_

PyObject* nrnmodule_

static

Definition at line 2469 of file nrnpy_nrn.cpp.

nrnpy_methods

PyMethodDef nrnpy_methods[]

static

Initial value:

= {
    {"cas", nrnpy_cas, METH_VARARGS, "Return the currently accessed section."},
    {"allsec", nrnpy_forall, METH_VARARGS, "Return iterator over all sections."},
    {"set_psection",
     nrnpy_set_psection,
     METH_VARARGS,
     "Specify the nrn.Section.psection callback."},
    {NULL}}

Definition at line 2458 of file nrnpy_nrn.cpp.

nrnpy_o2loc2_p_

void(* nrnpy_o2loc2_p_) (Object *, Section **, double *) ( Object *  , Section **  , double *    )

extern

Definition at line 30 of file point.cpp.

nrnpy_o2loc_p_

void(* nrnpy_o2loc_p_) (Object *, Section **, double *) ( Object *  , Section **  , double *    )

extern

Definition at line 29 of file point.cpp.

nrnpy_o2sec_p_

Section*(* nrnpy_o2sec_p_) (Object *) ( Object *  o )

extern

Definition at line 21 of file seclist.cpp.

nrnpy_ob_is_seg

int(* nrnpy_ob_is_seg) (Object *) ( Object *  )

extern

Definition at line 47 of file nrnmenu.cpp.

nrnpy_psection

PyObject* nrnpy_psection

static

Definition at line 826 of file nrnpy_nrn.cpp.

nrnpy_pyobj_sym_

Symbol* nrnpy_pyobj_sym_

extern

nrnpy_pysec_cell_equals_p_

int(* nrnpy_pysec_cell_equals_p_) (Section *, Object *) ( Section *  , Object *    )

extern

Definition at line 31 of file cabcode.cpp.

nrnpy_pysec_cell_p_

Object*(* nrnpy_pysec_cell_p_) (Section *) ( Section *  )

extern

Definition at line 30 of file cabcode.cpp.

nrnpy_pysec_name_p_

char*(* nrnpy_pysec_name_p_) (Section *) ( Section *  )

extern

Definition at line 29 of file cabcode.cpp.

nrnpy_reg_mech_p_

void(* nrnpy_reg_mech_p_) (int) ( int  )

extern

Definition at line 94 of file init.cpp.

nrnpy_seg_from_sec_x

Object*(* nrnpy_seg_from_sec_x) (Section *, double x) ( Section *  , double  x  )

extern

Definition at line 123 of file netcvode.cpp.

pallseg_of_sec_iter_type

PyTypeObject* pallseg_of_sec_iter_type

static

Definition at line 80 of file nrnpy_nrn.cpp.

pmech_generic_type

PyTypeObject* pmech_generic_type

static

Definition at line 84 of file nrnpy_nrn.cpp.

pmech_of_seg_iter_generic_type

PyTypeObject* pmech_of_seg_iter_generic_type

static

Definition at line 83 of file nrnpy_nrn.cpp.

pmech_types

PyObject* pmech_types

Definition at line 88 of file nrnpy_nrn.cpp.

psection_type

PyTypeObject* psection_type

Definition at line 79 of file nrnpy_nrn.cpp.

pseg_of_sec_iter_type

PyTypeObject* pseg_of_sec_iter_type

static

Definition at line 81 of file nrnpy_nrn.cpp.

psegment_type

PyTypeObject* psegment_type

static

Definition at line 82 of file nrnpy_nrn.cpp.

pvar_of_mech_iter_generic_type

PyTypeObject* pvar_of_mech_iter_generic_type

static

Definition at line 85 of file nrnpy_nrn.cpp.

range_type

PyTypeObject* range_type

static

Definition at line 86 of file nrnpy_nrn.cpp.

rangevars_

PyObject* rangevars_

Definition at line 89 of file nrnpy_nrn.cpp.