nrncore_utils.cpp File Reference

#include "nrncore_utils.h"
#include "nrncore_write/callbacks/nrncore_callbacks.h"
#include "nrnconf.h"
#include <cstdlib>
#include "nrndae_c.h"
#include "section.h"
#include "hocdec.h"
#include "nrnsection_mapping.h"
#include "vrecitem.h"
#include "parse.hpp"
#include <string>
#include <unistd.h>
#include <algorithm>
#include <cerrno>
#include "nrnwrap_dlfcn.h"

Go to the source code of this file.

Macros
#define	RTLD_NODELETE   0

Functions
void	model_ready ()
int	count_distinct (double *data, int len)
	Count number of unique elements in the array. More...
void	nrnbbcore_register_mapping ()
	For BBP use case, we want to write section-segment mapping to gid_3.dat file. More...
bool	file_exist (const std::string &path)
	Check if file with given path exist. More...
int	nrn_dblpntr2nrncore (double *pd, NrnThread &nt, int &type, int &index)

Variables
bool	corenrn_direct
int	diam_changed
int	v_structure_change
int	tree_changed
const char *	bbcore_write_version
NrnMappingInfo	mapinfo
	mapping information More...
void(*	nrnthread_v_transfer_ )(NrnThread *)
short *	nrn_is_artificial_

Macro Definition Documentation

RTLD_NODELETE

#define RTLD_NODELETE   0

Definition at line 22 of file nrncore_utils.cpp.

Function Documentation

count_distinct()

int count_distinct	(	double *	data,
		int	len
	)

Count number of unique elements in the array.

there is a copy of the vector but we are primarily using it for small section list vectors.

Definition at line 69 of file nrncore_utils.cpp.

file_exist()

bool file_exist

(

const std::string &

path

)

Check if file with given path exist.

Definition at line 123 of file nrncore_utils.cpp.

model_ready()

void model_ready

(

)

Definition at line 34 of file nrncore_utils.cpp.

nrn_dblpntr2nrncore()

int nrn_dblpntr2nrncore	(	double *	pd,
		NrnThread &	nt,
		int &	type,
		int &	index
	)

Definition at line 137 of file nrncore_utils.cpp.

nrnbbcore_register_mapping()

void nrnbbcore_register_mapping

(

)

For BBP use case, we want to write section-segment mapping to gid_3.dat file.

This information will be provided through neurodamus HOC interface with following format: gid : number of non-empty neurons in the cellgroup name : name of section list (like soma, axon, apic) nsec : number of sections sections : list of sections segments : list of segments

Definition at line 89 of file nrncore_utils.cpp.

Variable Documentation

bbcore_write_version

const char* bbcore_write_version

extern

Definition at line 25 of file nrncore_io.cpp.

corenrn_direct

bool corenrn_direct

extern

Definition at line 138 of file nrncore_write.cpp.

diam_changed

int diam_changed

extern

Definition at line 23 of file cabcode.cpp.

mapinfo

NrnMappingInfo mapinfo

extern

mapping information

Definition at line 133 of file nrncore_write.cpp.

nrn_is_artificial_

short* nrn_is_artificial_

extern

Definition at line 193 of file init.cpp.

nrnthread_v_transfer_

void(* nrnthread_v_transfer_) (NrnThread *) ( NrnThread *  nt )

extern

Definition at line 153 of file fadvance.cpp.

tree_changed

int tree_changed

Definition at line 26 of file nrncore_utils.cpp.

v_structure_change

int v_structure_change

Definition at line 26 of file nrncore_utils.cpp.