modl.h

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#include <stdio.h>
#if HAVE_STRING_H
#include <string.h>
#else
#include <strings.h>
#endif
#include <assert.h>
 
/**
 * \dir
 * \brief NMODL NMODL Translator (NOCMODL) Implementation
 *
 * \file
 * \brief NMODL parser global flags / functions
 */
 
/**
 * @defgroup NMODL NMODL Translator
 * @brief Implementation of NMODL Source-to-Source translator (NOCMODL)
 *
 * @{
 */
 
 
/*-
  The central data structure throughout modl is the list. Items can be
  inserted before a known item, inserted at the head of a list, or appended
  to the tail of a list. Items can be removed from a list. Lists can contain
  mixed types of items. Often an item which was an input token is edited and
  replaced by a string. The main types of items are strings and symbols.
  Lists used are:
 
  intoken   Everytime the lexical analyser reads an input token it is
        placed in this list. Much translation to C takes place during
        parsing and most of that editing is done in this list. After
        an entire block is processed, the tokens are moved as a group
        to another list.
 
  initfunc  main body of initmodel() from INITIAL. Automatic statements
        of the form state = state0 are constructed here.
  constructorfunc   statements added to tail of allocation function
  destructorfunc    statements executed when POINT_PROCESS destroyed
  termfunc  main body of terminal() from TERMINAL
  modelfunc main body of model() from EQUATION. SOLVE statements in the
        equation block get expanded in this list
  procfunc  all remaining blocks get concatenated to this list. It
        also gets the declarations. By prepending to procfunc, one
        can guarantee that a declaration precedes usage.
  initlist  automatically generated statements that are to be executed
        only once are constructed here. Contains setup of slist's
        and dist's, etc. i.e. setup of indirect pointer lists to
        state groups.
 
 Other lists (not global) but used in several files are:
 
  symlist[] symbol table. One list for every beginning ascii character.
        see symbol.c and symbol.h. See the Symbol structure below.
  symlistlist   for a stack of local symbol lists for LOCAL variables.
        Local variable 'name' is  translated as _lname so that
        there can be no conflict with the 'p' array.
  syminorder    Maintains order of variable declarations in the input file.
        Used to get good order in the .var file.
 
  firstlist Statements that must appear before anything else in the
        .c file. The only usage at this time is declaration of
        LOCAL variables outside of blocks.
 
  plotlist  variables to be plotted on first entry to scop
 
 Other lists used for local or very specific purposes are:
 
  indeplist Independent variable info.
  parmlist  parameters in a SENS statement
  statelist states used in a block containing a SENS statement
  sensinfo  see sens.c
  senstmt   see sens.c
  solvq     Item location and method stored when SOLVE statement occurs.
        Solve statements are processed after all input is read.
  eqnq      Linear equations assembled using this list.
 
 Kinetic.c should be modified to make uniform use of List's instead of
 special structures for Reaction, Rlist, etc.
 */
 
/* For char buffers that might be called on to hold long path names */
/* Note that paths can exceed MAX_PATH from <limits.h> on some systems */
#define NRN_BUFSIZE 8192
#include <limits.h>
#if MAX_PATH > NRN_BUFSIZE
#undef NRN_BUFSIZE
#define NRN_BUFSIZE MAX_PATH
#endif
 
typedef struct Item List; /* list of mixed items */
typedef struct Item {
    short itemtype;
    union {
        struct Item* itm;
        List* lst;
        char* str;
        struct Symbol* sym;
    } element; /* pointer to the actual item */
    struct Item* next;
    struct Item* prev;
} Item;
#define ITEM0 (Item*) 0
#define LIST0 (List*) 0
 
#define ITERATE(itm, lst) for (itm = (lst)->next; itm != (lst); itm = itm->next)
 
/*-
The symbol structure gives info about tokens. Not all tokens need all
elements. Eg. the STRING uses only type and name.  Much storage could be
saved and much greater clarity could be attained if each type had its own
sub stucture.  Currently many of the structure elements serve very different
purposes depending on the type.
The following is a list of the current element usage:
 type       token number from parse1.ypp
 subtype    see definitions below
 u.i        integration method - flag for variable step
        equation block - function number for generating variables
 u.str      scop variables - max,min,units for .var file
 used       state variable - temporary flag that it is used in an equation
        equation block - number of state variables used (# unknowns)
        in parout.c - the numeric order in the .var file. Generated
          and used in parout.c for the plotlist.
 usage      a token is used as a variable (DEP) or function (FUNC)
        Another field, EXPLICIT_DECL, is used to determine if a
        variable appears in the input file or is automatically
        created, thus helping to organize the .var file.
 araydim    arrays - dimension
 discdim    discrete variable - dimension
 varnum     state variable - during processing of a block containing
         equations in which simultaneous equations result; column
         number of state variable in the matrix.
 level      lowest submodel level number for declarations of this
         symbol. Used for parameters ( in explicit_decl()).
         The default value is 100.
 name       token name
*/
typedef struct Symbol {
    short type;
    long subtype;
#if NMODL
    short nrntype;
    short assigned_to_;
    int no_threadargs; /* introduced for FUNCTION_TABLE table_name */
#if CVODE
    int* slist_info_; /* blunt instrument for retrieving ion concentration slist value */
#endif
    int ioncount_; /* ppvar index for ions */
#endif
    union {
        int i;
        char* str;
    } u;
    int used;
    int usage;
    int araydim;
    int discdim;
    int varnum; /* column number of state variable in
                 * equations */
    short level;
    char* name;
} Symbol;
#define SYM0 (Symbol*) 0
 
/*
 * this is convenient way to get the element pointer if you know what type
 * the item is
 */
#define SYM(q) ((q)->element.sym)
#define STR(q) ((q)->element.str)
#define ITM(q) ((q)->element.itm)
#define LST(q) ((q)->element.lst)
/* types not defined in parser */
#define SPECIAL 1
#define SYMBOL  1
#define ITEM    2
#define LIST    3
/*
 * An item type, STRING is also used as an item type
 * An item type, VERBATIM is also used as an item type which is to be
 *  treated the same as a STRING but with no prepended space on output.
 */
 
/* subtypes */
#define KEYWORD       01
#define PARM          02
#define INDEP         04
#define DEP           010 /* also in usage field */
#define STAT          020
#define ARRAY         040
#define FUNCT         0100 /* also in usage field */
#define PROCED        0200
#define NEGATIVE      0400
#define SEMI          01 /* ";" */
#define BEGINBLK      02 /* "{" */
#define ENDBLK        04 /* "}" */
#define DERF          01000
#define KINF          02000
#define NLINF         04000
#define DISCF         010000
#define STEP1         020000
#define PARF          040000
#define EXTDEF        0100000
#define LINF          0200000
#define UNITDEF       0400000L
#define EXTDEF2       01000000L  /* functions that can take array or function name arguments */
#define nmodlCONST    02000000L  /* constants that do not appear in .var file */
#define EXTDEF3       04000000L  /* get two extra reset arguments at beginning */
#define INTGER        010000000L /* must be cast to double in expr */
#define EXTDEF4       020000000L /* get extra NrnThread* arg at beginning */
#define EXTDEF5       040000000L /* not threadsafe from the extdef list */
#define EXPLICIT_DECL 01         /* usage field, variable occurs in input file */
 
extern char *emalloc(unsigned), /* malloc with out of space checking */
    *stralloc(char*, char*),    /* copies string to new space */
    *inputline(),               /* used only by parser to get title line */
    *inputtopar(),              /* used only by parser to get units */
    *Gets(char*);               /* used only in io.c to get string from fin. */
 
#if 0
#if __TURBOC__ || SYSV || NeXT || LINUX
#else
extern char    *sprintf();
#endif
#endif
 
extern int nmodl_text; /* if 1, the text of the mod file is a string in the mod file */
extern List* filetxtlist;
 
extern List *newlist(),                      /* begins new empty list */
    *inputtext();                            /* used by parser to get block text from
                                              * VERBATIM and COMMENT */
extern Item *putintoken(char*s, short type), /* construct symbol and store input tokens */
    *insertstr(Item*item, char*str),         /* before a known Item */
    *insertsym(List*list, Symbol*sym), *linsertstr(List*list, char*str), /* prepend to list */
    *lappendstr(List*list, char*str),                                    /* append to list */
    *linsertsym(List*list, Symbol*sym), *lappendsym(List*list, Symbol*sym),
    *lappenditem(List*list, Item*item), *lappendlst(List*list, List*lst),
    *next(), /* not used but should be instead of q->next */
    *prev();
 
extern Symbol *install(char*, int), /* Install token in symbol table */
    *lookup(char*),                 /* lookup name in symbol table */
    *copylocal(Symbol*),            /* install LOCAL variable symbol */
    *ifnew_parminstall(char*name, char*num, char*units, char*limits); /* new .var info only if
                                                                       * not already done. */
#include "nmodlfunc.h"
 
extern char* finname; /* the input file prefix */
extern char buf[];    /* general purpose temporary buffer */
extern char* modprefix;
 
extern List *intoken, /* Main list of input tokens */
    *initfunc,        /* see discussion above */
    *constructorfunc, *destructorfunc, *modelfunc, *termfunc, *procfunc, *initlist, *firstlist,
    *plotlist;
 
extern FILE *fin, /* .mod input file descriptor */
    *fparout,     /* .var file */
    *fcout;       /* .c file */
 
extern Symbol *semi, /* ';'. When seen on output, causes newline */
    *beginblk,       /* '{'. Used for rudimentary indentation */
    *endblk;         /* on output. */
 
extern void printlist(List*);
 
/* the following is to get lint to shut up */
#if LINT
#undef assert
#define assert(arg) \
    {               \
        if (arg)    \
            ;       \
    } /* so fprintf doesn't give lint */
extern char* clint;
extern int ilint;
extern Item* qlint;
#define Sprintf     clint = sprintf
#define Fprintf     ilint = fprintf
#define Fclose      ilint = fclose
#define Fflush      ilint = fflush
#define Printf      ilint = printf
#define Strcpy      clint = strcpy
#define Strcat      clint = strcat
#define Insertstr   qlint = insertstr
#define Insertsym   qlint = insertsym
#define Linsertsym  qlint = linsertsym
#define Linsertstr  qlint = linsertstr
#define Lappendsym  qlint = lappendsym
#define Lappendstr  qlint = lappendstr
#define Lappenditem qlint = lappenditem
#define Lappendlst  qlint = lappendlst
#define IGNORE(arg) \
    {               \
        if (arg)    \
            ;       \
    }
#define Free(arg) free((char*) (arg))
#else
#define Sprintf     sprintf
#define Fprintf     fprintf
#define Fclose      fclose
#define Fflush      fflush
#define Printf      printf
#define Strcpy      strcpy
#define Strcat      strcat
#define Insertstr   insertstr
#define Insertsym   insertsym
#define Linsertsym  linsertsym
#define Linsertstr  linsertstr
#define Lappendsym  lappendsym
#define Lappendstr  lappendstr
#define Lappenditem lappenditem
#define Lappendlst  lappendlst
#define IGNORE(arg) arg
#define Free(arg)   free((void*) (arg))
#endif
 
 
void verbatim_adjust(char* q);
/** @} */  // end of hoc_functions