#include <../../nrnconf.h>
#include <string.h>
#include <stdlib.h>
#include <OS/list.h>
#include <math.h>
#include "nrnoc2iv.h"
#include "classreg.h"
#include "kschan.h"
#include "kssingle.h"
#include "parse.hpp"
#include "nrniv_mf.h"

Macros
#define	NSingleIndex 0

#define	nt_dt nrn_threads->_dt

Typedefs
using	KSChanList = std::vector< KSChan * >

Functions
char *	hoc_symbol_units (Symbol , const char )

void	nrn_mk_table_check ()

spREAL *	spGetElement (char *, int, int)

static void	check_objtype (Object o, Symbol s)

static void	unref (Object *obj)

static void	chkobj (void *v)

static void	check_table_thread_ (double p, Datum ppvar, Datum thread, NrnThread vnt, int type)

static void	nrn_alloc (Prop *prop)

static void	nrn_init (NrnThread nt, Memb_list ml, int type)

static void	nrn_cur (NrnThread nt, Memb_list ml, int type)

static void	nrn_jacob (NrnThread nt, Memb_list ml, int type)

static void	nrn_state (NrnThread nt, Memb_list ml, int type)

static int	ode_count (int type)

static void	ode_map (int ieq, double pv, double pvdot, double p, Datum pd, double *atol, int type)

static void	ode_spec (NrnThread , Memb_list ml, int type)

static void	ode_matsol (NrnThread nt, Memb_list ml, int type)

static void	singchan (NrnThread nt, Memb_list ml, int type)

static void *	hoc_create_pnt (Object *ho)

static void	hoc_destroy_pnt (void *v)

static double	hoc_loc_pnt (void *v)

static double	hoc_has_loc (void *v)

static double	hoc_get_loc_pnt (void *v)

static double	hoc_nsingle (void *v)

void	kschan_cvode_single_update ()

static double	ks_setstructure (void *v)

static double	ks_remove_state (void *v)

static double	ks_remove_transition (void *v)

static double	ks_ngate (void *v)

static double	ks_nstate (void *v)

static double	ks_ntrans (void *v)

static double	ks_nligand (void *v)

static double	ks_is_point (void *v)

static double	ks_single (void *v)

static double	ks_iv_type (void *v)

static double	ks_gmax (void *v)

static double	ks_erev (void *v)

static double	ks_vres (void *v)

static double	ks_rseed (void *v)

static double	ks_usetable (void *v)

static Object **	temp_objvar (const char name, void v, Object **obp)

static Object **	ks_add_hhstate (void *v)

static Object **	ks_add_ksstate (void *v)

static Object **	ks_add_transition (void *v)

static Object **	ks_trans (void *v)

static Object **	ks_state (void *v)

static Object **	ks_gate (void *v)

static const char **	ks_name (void *v)

static const char **	ks_ion (void *v)

static const char **	ks_ligand (void *v)

static double	kss_frac (void *v)

static double	kss_index (void *v)

static Object **	kss_gate (void *v)

static const char **	kss_name (void *v)

static double	ksg_nstate (void *v)

static double	ksg_power (void *v)

static double	ksg_sindex (void *v)

static double	ksg_index (void *v)

static double	kst_set_f (void *v)

static double	kst_index (void *v)

static double	kst_type (void *v)

static double	kst_ftype (void *v)

static double	kst_ab (void *v)

static double	kst_inftau (void *v)

static double	kst_f (void *v)

static Object **	kst_src (void *v)

static Object **	kst_target (void *v)

static Object **	kst_parm (void *v)

static const char **	kst_ligand (void *v)

static double	kst_stoichiometry (void *v)

static double	ks_pr (void *v)

static void *	ks_cons (Object *o)

static void	ks_destruct (void *)

static void *	kss_cons (Object *o)

static void	kss_destruct (void *)

static void *	ksg_cons (Object *o)

static void	ksg_destruct (void *)

static void *	kst_cons (Object *o)

static void	kst_destruct (void *)

void	KSChan_reg ()

static int	ksusing (int type)

Variables
static KSChanList *	channels

static Symbol *	ksstate_sym

static Symbol *	ksgate_sym

static Symbol *	kstrans_sym

static Member_func	member_func []

static Member_func	ks_dmem []

static Member_ret_obj_func	ks_omem []

static Member_ret_str_func	ks_smem []

static Member_func	kss_dmem [] = {{"frac", kss_frac}, {"index", kss_index}, {nullptr, nullptr}}

static Member_ret_obj_func	kss_omem [] = {{"gate", kss_gate}, {nullptr, nullptr}}

static Member_ret_str_func	kss_smem [] = {{"name", kss_name}, {nullptr, nullptr}}

static Member_func	ksg_dmem []

static Member_ret_obj_func	ksg_omem [] = {{nullptr, nullptr}}

static Member_ret_str_func	ksg_smem [] = {{nullptr, nullptr}}

static Member_func	kst_dmem []

static Member_ret_obj_func	kst_omem []

static Member_ret_str_func	kst_smem [] = {{"ligand", kst_ligand}, {nullptr, nullptr}}

static const char *	m_kschan_pat [] = {"0", "kschan", "gmax", 0, "g", "i", 0, 0, 0}

static const char *	m_kschan [9]

Macro Definition Documentation

◆ NSingleIndex

#define NSingleIndex 0

Definition at line 13 of file kschan.cpp.

◆ nt_dt

#define nt_dt nrn_threads->_dt

Definition at line 30 of file kschan.cpp.

Typedef Documentation

◆ KSChanList

using KSChanList = std::vector<KSChan*>

Definition at line 19 of file kschan.cpp.

Function Documentation

◆ check_objtype()

static void check_objtype	(	Object *	o,
		Symbol *	s
	)

static

Definition at line 32 of file kschan.cpp.

◆ check_table_thread_()

static void check_table_thread_	(	double *	p,
		Datum *	ppvar,
		Datum *	thread,
		NrnThread *	vnt,
		int	type
	)

static

Definition at line 56 of file kschan.cpp.

◆ chkobj()

static void chkobj ( void * v )

static

Definition at line 50 of file kschan.cpp.

◆ hoc_create_pnt()

static void* hoc_create_pnt ( Object * ho )

static

Definition at line 137 of file kschan.cpp.

◆ hoc_destroy_pnt()

static void hoc_destroy_pnt ( void * v )

static

Definition at line 140 of file kschan.cpp.

◆ hoc_get_loc_pnt()

static double hoc_get_loc_pnt ( void * v )

static

Definition at line 165 of file kschan.cpp.

◆ hoc_has_loc()

static double hoc_has_loc ( void * v )

static

Definition at line 162 of file kschan.cpp.

◆ hoc_loc_pnt()

static double hoc_loc_pnt ( void * v )

static

Definition at line 158 of file kschan.cpp.

◆ hoc_nsingle()

static double hoc_nsingle ( void * v )

static

Definition at line 168 of file kschan.cpp.

◆ hoc_symbol_units()

char* hoc_symbol_units	(	Symbol *	sym,
		const char *	units
	)

Definition at line 126 of file code2.cpp.

◆ ks_add_hhstate()

static Object** ks_add_hhstate ( void * v )

static

Definition at line 329 of file kschan.cpp.

◆ ks_add_ksstate()

static Object** ks_add_ksstate ( void * v )

static

Definition at line 335 of file kschan.cpp.

◆ ks_add_transition()

static Object** ks_add_transition ( void * v )

static

Definition at line 349 of file kschan.cpp.

◆ ks_cons()

static void* ks_cons ( Object * o )

static

Definition at line 765 of file kschan.cpp.

◆ ks_destruct()

static void ks_destruct ( void * )

static

Definition at line 785 of file kschan.cpp.

◆ ks_erev()

static double ks_erev ( void * v )

static

Definition at line 276 of file kschan.cpp.

◆ ks_gate()

static Object** ks_gate ( void * v )

static

Definition at line 395 of file kschan.cpp.

◆ ks_gmax()

static double ks_gmax ( void * v )

static

Definition at line 268 of file kschan.cpp.

◆ ks_ion()

static const char** ks_ion ( void * v )

static

Definition at line 411 of file kschan.cpp.

◆ ks_is_point()

static double ks_is_point ( void * v )

static

Definition at line 243 of file kschan.cpp.

◆ ks_iv_type()

static double ks_iv_type ( void * v )

static

Definition at line 256 of file kschan.cpp.

◆ ks_ligand()

static const char** ks_ligand ( void * v )

static

Definition at line 421 of file kschan.cpp.

◆ ks_name()

static const char** ks_name ( void * v )

static

Definition at line 401 of file kschan.cpp.

◆ ks_ngate()

static double ks_ngate ( void * v )

static

Definition at line 223 of file kschan.cpp.

◆ ks_nligand()

static double ks_nligand ( void * v )

static

Definition at line 238 of file kschan.cpp.

◆ ks_nstate()

static double ks_nstate ( void * v )

static

Definition at line 228 of file kschan.cpp.

◆ ks_ntrans()

static double ks_ntrans ( void * v )

static

Definition at line 233 of file kschan.cpp.

◆ ks_pr()

static double ks_pr ( void * v )

static

Definition at line 641 of file kschan.cpp.

◆ ks_remove_state()

static double ks_remove_state ( void * v )

static

Definition at line 192 of file kschan.cpp.

◆ ks_remove_transition()

static double ks_remove_transition ( void * v )

static

Definition at line 207 of file kschan.cpp.

◆ ks_rseed()

static double ks_rseed ( void * v )

static

Definition at line 291 of file kschan.cpp.

◆ ks_setstructure()

static double ks_setstructure ( void * v )

static

Definition at line 186 of file kschan.cpp.

◆ ks_single()

static double ks_single ( void * v )

static

Definition at line 248 of file kschan.cpp.

◆ ks_state()

static Object** ks_state ( void * v )

static

Definition at line 389 of file kschan.cpp.

◆ ks_trans()

static Object** ks_trans ( void * v )

static

Definition at line 371 of file kschan.cpp.

◆ ks_usetable()

static double ks_usetable ( void * v )

static

Definition at line 298 of file kschan.cpp.

◆ ks_vres()

static double ks_vres ( void * v )

static

Definition at line 284 of file kschan.cpp.

◆ kschan_cvode_single_update()

void kschan_cvode_single_update ( )

Definition at line 182 of file kschan.cpp.

◆ KSChan_reg()

void KSChan_reg ( )

Definition at line 808 of file kschan.cpp.

◆ ksg_cons()

static void* ksg_cons ( Object * o )

static

Definition at line 797 of file kschan.cpp.

◆ ksg_destruct()

static void ksg_destruct ( void * )

static

Definition at line 801 of file kschan.cpp.

◆ ksg_index()

static double ksg_index ( void * v )

static

Definition at line 485 of file kschan.cpp.

◆ ksg_nstate()

static double ksg_nstate ( void * v )

static

Definition at line 463 of file kschan.cpp.

◆ ksg_power()

static double ksg_power ( void * v )

static

Definition at line 469 of file kschan.cpp.

◆ ksg_sindex()

static double ksg_sindex ( void * v )

static

Definition at line 479 of file kschan.cpp.

◆ kss_cons()

static void* kss_cons ( Object * o )

static

Definition at line 792 of file kschan.cpp.

◆ kss_destruct()

static void kss_destruct ( void * )

static

Definition at line 796 of file kschan.cpp.

◆ kss_frac()

static double kss_frac ( void * v )

static

Definition at line 428 of file kschan.cpp.

◆ kss_gate()

static Object** kss_gate ( void * v )

static

Definition at line 443 of file kschan.cpp.

◆ kss_index()

static double kss_index ( void * v )

static

Definition at line 437 of file kschan.cpp.

◆ kss_name()

static const char** kss_name ( void * v )

static

Definition at line 452 of file kschan.cpp.

◆ kst_ab()

static double kst_ab ( void * v )

static

Definition at line 546 of file kschan.cpp.

◆ kst_cons()

static void* kst_cons ( Object * o )

static

Definition at line 802 of file kschan.cpp.

◆ kst_destruct()

static void kst_destruct ( void * )

static

Definition at line 806 of file kschan.cpp.

◆ kst_f()

static double kst_f ( void * v )

static

Definition at line 566 of file kschan.cpp.

◆ kst_ftype()

static double kst_ftype ( void * v )

static

Definition at line 531 of file kschan.cpp.

◆ kst_index()

static double kst_index ( void * v )

static

Definition at line 509 of file kschan.cpp.

◆ kst_inftau()

static double kst_inftau ( void * v )

static

Definition at line 556 of file kschan.cpp.

◆ kst_ligand()

static const char** kst_ligand ( void * v )

static

Definition at line 617 of file kschan.cpp.

◆ kst_parm()

static Object** kst_parm ( void * v )

static

Definition at line 592 of file kschan.cpp.

◆ kst_set_f()

static double kst_set_f ( void * v )

static

Definition at line 491 of file kschan.cpp.

◆ kst_src()

static Object** kst_src ( void * v )

static

Definition at line 578 of file kschan.cpp.

◆ kst_stoichiometry()

static double kst_stoichiometry ( void * v )

static

Definition at line 633 of file kschan.cpp.

◆ kst_target()

static Object** kst_target ( void * v )

static

Definition at line 585 of file kschan.cpp.

◆ kst_type()

static double kst_type ( void * v )

static

Definition at line 515 of file kschan.cpp.

◆ ksusing()

static int ksusing ( int type )

static

Definition at line 3131 of file kschan.cpp.

◆ nrn_alloc()

static void nrn_alloc ( Prop * prop )

static

Definition at line 61 of file kschan.cpp.

◆ nrn_cur()

static void nrn_cur	(	NrnThread *	nt,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 72 of file kschan.cpp.

◆ nrn_init()

static void nrn_init	(	NrnThread *	nt,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 66 of file kschan.cpp.

◆ nrn_jacob()

static void nrn_jacob	(	NrnThread *	nt,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 85 of file kschan.cpp.

◆ nrn_mk_table_check()

void nrn_mk_table_check ( )

Definition at line 1065 of file multicore.cpp.

◆ nrn_state()

static void nrn_state	(	NrnThread *	nt,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 98 of file kschan.cpp.

◆ ode_count()

static int ode_count ( int type )

static

Definition at line 111 of file kschan.cpp.

◆ ode_map()

static void ode_map	(	int	ieq,
		double **	pv,
		double **	pvdot,
		double *	p,
		Datum *	pd,
		double *	atol,
		int	type
	)

static

Definition at line 117 of file kschan.cpp.

◆ ode_matsol()

static void ode_matsol	(	NrnThread *	nt,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 127 of file kschan.cpp.

◆ ode_spec()

static void ode_spec	(	NrnThread *	,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 122 of file kschan.cpp.

◆ singchan()

static void singchan	(	NrnThread *	nt,
		Memb_list *	ml,
		int	type
	)

static

Definition at line 132 of file kschan.cpp.

◆ spGetElement()

spREAL* spGetElement	(	char *	eMatrix,
		int	Row,
		int	Col
	)

Definition at line 195 of file spbuild.c.

◆ temp_objvar()

static Object** temp_objvar	(	const char *	name,
		void *	v,
		Object **	obp
	)

static

Definition at line 317 of file kschan.cpp.

◆ unref()

static void unref ( Object * obj )

static

Definition at line 43 of file kschan.cpp.

Variable Documentation

◆ channels

KSChanList* channels

static

Definition at line 20 of file kschan.cpp.

◆ ks_dmem

Member_func ks_dmem[]

static

Initial value:

= {
    
    {"setstructure", ks_setstructure},
 
    {"remove_state", ks_remove_state},
    {"remove_transition", ks_remove_transition},
 
    {"ngate", ks_ngate},
    {"nstate", ks_nstate},
    {"ntrans", ks_ntrans},
    {"nligand", ks_nligand},
    {"is_point", ks_is_point},
    {"single", ks_single},
    {"pr", ks_pr},
 
    {"iv_type", ks_iv_type},
    {"gmax", ks_gmax},
    {"erev", ks_erev},
    {"vres", ks_vres},
    {"rseed", ks_rseed},
    {"usetable", ks_usetable},
    {nullptr, nullptr}}

Definition at line 696 of file kschan.cpp.

◆ ks_omem

Member_ret_obj_func ks_omem[]

static

Initial value:

= {{"add_hhstate", ks_add_hhstate},
                                        {"add_ksstate", ks_add_ksstate},
                                        {"add_transition", ks_add_transition},
                                        {"trans", ks_trans},
                                        {"state", ks_state},
                                        {"gate", ks_gate},
                                        {nullptr, nullptr}}

Definition at line 719 of file kschan.cpp.

◆ ks_smem

Member_ret_str_func ks_smem[]

static

Initial value:

= {{"name", ks_name},
                                        {"ion", ks_ion},
                                        {"ligand", ks_ligand},
                                        {nullptr, nullptr}}

Definition at line 727 of file kschan.cpp.

◆ ksg_dmem

Member_func ksg_dmem[]

static

Initial value:

= {{"nstate", ksg_nstate},
                                 {"power", ksg_power},
                                 {"sindex", ksg_sindex},
                                 {"index", ksg_index},
                                 {nullptr, nullptr}}

Definition at line 738 of file kschan.cpp.

◆ ksg_omem

Member_ret_obj_func ksg_omem[] = {{nullptr, nullptr}}

static

Definition at line 744 of file kschan.cpp.

◆ ksg_smem

Member_ret_str_func ksg_smem[] = {{nullptr, nullptr}}

static

Definition at line 746 of file kschan.cpp.

◆ ksgate_sym

Symbol* ksgate_sym

static

Definition at line 27 of file kschan.cpp.

◆ kss_dmem

Member_func kss_dmem[] = {{"frac", kss_frac}, {"index", kss_index}, {nullptr, nullptr}}

static

Definition at line 732 of file kschan.cpp.

◆ kss_omem

Member_ret_obj_func kss_omem[] = {{"gate", kss_gate}, {nullptr, nullptr}}

static

Definition at line 734 of file kschan.cpp.

◆ kss_smem

Member_ret_str_func kss_smem[] = {{"name", kss_name}, {nullptr, nullptr}}

static

Definition at line 736 of file kschan.cpp.

◆ ksstate_sym

Symbol* ksstate_sym

static

Definition at line 26 of file kschan.cpp.

◆ kst_dmem

Member_func kst_dmem[]

static

Initial value:

= {{"set_f", kst_set_f},
                                 {"index", kst_index},
                                 {"type", kst_type},
                                 {"ftype", kst_ftype},
                                 {"ab", kst_ab},
                                 {"inftau", kst_inftau},
                                 {"f", kst_f},
                                 {"stoichiometry", kst_stoichiometry},
                                 {nullptr, nullptr}}

Definition at line 748 of file kschan.cpp.

◆ kst_omem

Member_ret_obj_func kst_omem[]

static

Initial value:

= {{"src", kst_src},
                                         {"target", kst_target},
                                         {"parm", kst_parm},
                                         {nullptr, nullptr}}

Definition at line 758 of file kschan.cpp.

◆ kst_smem

Member_ret_str_func kst_smem[] = {{"ligand", kst_ligand}, {nullptr, nullptr}}

static

Definition at line 763 of file kschan.cpp.

◆ kstrans_sym

Symbol* kstrans_sym

static

Definition at line 28 of file kschan.cpp.

◆ m_kschan

const char* m_kschan[9]

static

Definition at line 823 of file kschan.cpp.

◆ m_kschan_pat

const char* m_kschan_pat[] = {"0", "kschan", "gmax", 0, "g", "i", 0, 0, 0}

static

Definition at line 822 of file kschan.cpp.

◆ member_func

Member_func member_func[]

static

Initial value:

= {{"loc", hoc_loc_pnt},
                                    {"has_loc", hoc_has_loc},
                                    {"get_loc", hoc_get_loc_pnt},
                                    {"nsingle", hoc_nsingle},
                                    {nullptr, nullptr}}

Definition at line 176 of file kschan.cpp.

Macros

Typedefs

Functions

Variables

Macro Definition Documentation

◆ NSingleIndex

◆ nt_dt

Typedef Documentation

◆ KSChanList

Function Documentation

◆ check_objtype()

◆ check_table_thread_()

◆ chkobj()

◆ hoc_create_pnt()

◆ hoc_destroy_pnt()

◆ hoc_get_loc_pnt()

◆ hoc_has_loc()

◆ hoc_loc_pnt()

◆ hoc_nsingle()

◆ hoc_symbol_units()

◆ ks_add_hhstate()

◆ ks_add_ksstate()

◆ ks_add_transition()

◆ ks_cons()

◆ ks_destruct()

◆ ks_erev()

◆ ks_gate()

◆ ks_gmax()

◆ ks_ion()

◆ ks_is_point()

◆ ks_iv_type()

◆ ks_ligand()

◆ ks_name()

◆ ks_ngate()

◆ ks_nligand()

◆ ks_nstate()

◆ ks_ntrans()

◆ ks_pr()

◆ ks_remove_state()

◆ ks_remove_transition()

◆ ks_rseed()

◆ ks_setstructure()

◆ ks_single()

◆ ks_state()

◆ ks_trans()

◆ ks_usetable()

◆ ks_vres()

◆ kschan_cvode_single_update()

◆ KSChan_reg()

◆ ksg_cons()

◆ ksg_destruct()

◆ ksg_index()

◆ ksg_nstate()

◆ ksg_power()

◆ ksg_sindex()

◆ kss_cons()

◆ kss_destruct()

◆ kss_frac()

◆ kss_gate()

◆ kss_index()

◆ kss_name()

◆ kst_ab()

◆ kst_cons()

◆ kst_destruct()

◆ kst_f()

◆ kst_ftype()

◆ kst_index()

◆ kst_inftau()

◆ kst_ligand()

◆ kst_parm()

◆ kst_set_f()

◆ kst_src()

◆ kst_stoichiometry()

◆ kst_target()

◆ kst_type()

◆ ksusing()

◆ nrn_alloc()

◆ nrn_cur()

◆ nrn_init()

◆ nrn_jacob()