#include <../../nrnconf.h>
#include <InterViews/resource.h>
#include "nrnmpi.h"
#include <math.h>
#include <stdlib.h>
#include "classreg.h"
#include "nrnoc2iv.h"
#include "datapath.h"
#include "cvodeobj.h"
#include "netcvode.h"
#include "membfunc.h"
#include "nrndaspk.h"
#include "tqueue.h"
#include "mymath.h"
#include "htlist.h"
#include <OS/list.h>
#include <nrnmutdec.h>
#include "cvodes/cvodes.h"
#include "cvodes/cvodes_impl.h"
#include "cvodes/cvdense.h"
#include "cvodes/cvdiag.h"
#include "shared/dense.h"
#include "ida/ida.h"
#include "nonvintblock.h"

Macros
#define	nt_dt nrn_threads->_dt

#define	nt_t nrn_threads->_t

#define	SUCCESS CV_SUCCESS

Typedefs
using	ExtraScatterList = std::vector< Object * >

Functions
void	cvode_fadvance ()

void	cvode_finitialize ()

static void	static_mutex_for_at_time (bool b)

int	linmod_extra_eqn_count ()

int	nrn_modeltype ()

void	nrn_cachevec (int)

Point_process *	ob2pntproc (Object *)

static double	solve (void *v)

static double	statistics (void *v)

static double	spikestat (void *v)

static double	queue_mode (void *v)

void	nrn_extra_scatter_gather (int direction, int tid)

static double	re_init (void *v)

static double	rtol (void *v)

static double	nrn_atol (void *v)

Symbol *	hoc_get_last_pointer_symbol ()

void	hoc_symbol_tolerance (Symbol *, double)

static double	abstol (void *v)

static double	active (void *v)

static double	stiff (void *v)

static double	maxorder (void *v)

static double	order (void *v)

static double	minstep (void *v)

static double	maxstep (void *v)

static double	jacobian (void *v)

static double	states (void *v)

static double	dstates (void *v)

double	nrn_hoc2fun (void *v)

double	nrn_hoc2scatter_y (void *v)

double	nrn_hoc2gather_y (void *v)

double	nrn_hoc2fixed_step (void *v)

static double	error_weights (void *v)

static double	acor (void *v)

static double	statename (void *v)

static double	use_local_dt (void *v)

static double	use_daspk (void *v)

static double	dae_init_dteps (void *v)

static double	use_mxb (void *v)

static double	cache_efficient (void *v)

static double	use_long_double (void *v)

static double	condition_order (void *v)

static double	debug_event (void *v)

static double	n_record (void *v)

static double	n_remove (void *v)

static double	simgraph_remove (void *v)

static double	state_magnitudes (void *v)

static double	tstop_event (void *v)

static double	current_method (void *v)

static double	peq (void *v)

static double	event_queue_info (void *v)

static double	store_events (void *v)

static Object **	netconlist (void *v)

static double	ncs_netcons (void *v)

static double	use_parallel (void *v)

static double	nrn_structure_change_count (void *v)

static double	nrn_diam_change_count (void *v)

static double	extra_scatter_gather (void *v)

static double	extra_scatter_gather_remove (void *v)

static double	use_fast_imem (void *v)

static double	poolshrink (void *)

static void *	cons (Object *)

static void	destruct (void *v)

void	Cvode_reg ()

static int	minit (CVodeMem cv_mem)

static int	msetup (CVodeMem cv_mem, int convfail, N_Vector ypred, N_Vector fpred, booleantype *jcurPtr, N_Vector vtemp, N_Vector vtemp2, N_Vector vtemp3)

static int	msolve (CVodeMem cv_mem, N_Vector b, N_Vector weight, N_Vector ycur, N_Vector fcur)

static int	msolve_lvardt (CVodeMem cv_mem, N_Vector b, N_Vector weight, N_Vector ycur, N_Vector fcur)

static void	mfree (CVodeMem cv_mem)

static void	f_gvardt (realtype t, N_Vector y, N_Vector ydot, void *f_data)

static void	f_lvardt (realtype t, N_Vector y, N_Vector ydot, void *f_data)

static void *	msolve_thread (NrnThread *)

static void *	msolve_thread_part1 (NrnThread *)

static void *	msolve_thread_part2 (NrnThread *)

static void *	msolve_thread_part3 (NrnThread *)

static void *	f_thread (NrnThread *)

static void *	f_thread_transfer_part1 (NrnThread *)

static void *	f_thread_transfer_part2 (NrnThread *)

static void *	f_thread_ms_part1 (NrnThread *)

static void *	f_thread_ms_part2 (NrnThread *)

static void *	f_thread_ms_part3 (NrnThread *)

static void *	f_thread_ms_part4 (NrnThread *)

static void *	f_thread_ms_part34 (NrnThread *)

static void *	maxstate_thread (NrnThread *nt)

Variables
void(*	nrn_multisplit_setup_ )()

int	hoc_return_type_code

double	dt

double	t

int	diam_changed

int	secondorder

int	nrn_use_selfqueue_

int	use_cachevec

void(*	nrnthread_v_transfer_ )(NrnThread *)

void(*	nrnmpi_v_transfer_ )()

int	cvode_active_

NetCvode *	net_cvode_instance

short *	nrn_is_artificial_

int	structure_change_cnt

int	diam_change_cnt

bool	nrn_use_fifo_queue_

bool	nrn_use_bin_queue_

int(*	nrnpy_pysame )(Object , Object )

int(*	nrnpy_hoccommand_exec )(Object *)

static ExtraScatterList *	extra_scatterlist [2]

static Member_func	members []

static Member_ret_obj_func	omembers [] = {{"netconlist", netconlist}, {nullptr, nullptr}}

static CVRhsFn	pf_

static bool	maxstate_b

static Cvode *	maxstate_cv

static N_Vector	msolve_b_

static N_Vector	msolve_ycur_

static Cvode *	msolve_cv_

static realtype	f_t_

static N_Vector	f_y_

static N_Vector	f_ydot_

static Cvode *	f_cv_

Macro Definition Documentation

◆ nt_dt

#define nt_dt nrn_threads->_dt

Definition at line 60 of file cvodeobj.cpp.

◆ nt_t

#define nt_t nrn_threads->_t

Definition at line 61 of file cvodeobj.cpp.

◆ SUCCESS

#define SUCCESS CV_SUCCESS

Definition at line 94 of file cvodeobj.cpp.

Typedef Documentation

◆ ExtraScatterList

using ExtraScatterList = std::vector<Object*>

Definition at line 529 of file cvodeobj.cpp.

Function Documentation

◆ abstol()

static double abstol ( void * v )

static

Definition at line 184 of file cvodeobj.cpp.

◆ acor()

static double acor ( void * v )

static

Definition at line 298 of file cvodeobj.cpp.

◆ active()

static double active ( void * v )

static

Definition at line 212 of file cvodeobj.cpp.

◆ cache_efficient()

static double cache_efficient ( void * v )

static

Definition at line 359 of file cvodeobj.cpp.

◆ condition_order()

static double condition_order ( void * v )

static

Definition at line 379 of file cvodeobj.cpp.

◆ cons()

static void* cons ( Object * )

static

Definition at line 651 of file cvodeobj.cpp.

◆ current_method()

static double current_method ( void * v )

static

Definition at line 455 of file cvodeobj.cpp.

◆ cvode_fadvance()

void cvode_fadvance ( )

◆ cvode_finitialize()

void cvode_finitialize ( )

◆ Cvode_reg()

void Cvode_reg ( )

Definition at line 673 of file cvodeobj.cpp.

◆ dae_init_dteps()

static double dae_init_dteps ( void * v )

static

Definition at line 337 of file cvodeobj.cpp.

◆ debug_event()

static double debug_event ( void * v )

static

Definition at line 389 of file cvodeobj.cpp.

◆ destruct()

static void destruct ( void * v )

static

Definition at line 666 of file cvodeobj.cpp.

◆ dstates()

static double dstates ( void * v )

static

Definition at line 281 of file cvodeobj.cpp.

◆ error_weights()

static double error_weights ( void * v )

static

Definition at line 292 of file cvodeobj.cpp.

◆ event_queue_info()

static double event_queue_info ( void * v )

static

Definition at line 477 of file cvodeobj.cpp.

◆ extra_scatter_gather()

static double extra_scatter_gather ( void * v )

static

Definition at line 544 of file cvodeobj.cpp.

◆ extra_scatter_gather_remove()

static double extra_scatter_gather_remove ( void * v )

static

Definition at line 558 of file cvodeobj.cpp.

◆ f_gvardt()

static void f_gvardt	(	realtype	t,
		N_Vector	y,
		N_Vector	ydot,
		void *	f_data
	)

static

Definition at line 1592 of file cvodeobj.cpp.

◆ f_lvardt()

static void f_lvardt	(	realtype	t,
		N_Vector	y,
		N_Vector	ydot,
		void *	f_data
	)

static

Definition at line 1627 of file cvodeobj.cpp.

◆ f_thread()

static void * f_thread ( NrnThread * nt )

static

Definition at line 1635 of file cvodeobj.cpp.

◆ f_thread_ms_part1()

static void * f_thread_ms_part1 ( NrnThread * nt )

static

Definition at line 1657 of file cvodeobj.cpp.

◆ f_thread_ms_part2()

static void * f_thread_ms_part2 ( NrnThread * nt )

static

Definition at line 1664 of file cvodeobj.cpp.

◆ f_thread_ms_part3()

static void * f_thread_ms_part3 ( NrnThread * nt )

static

Definition at line 1669 of file cvodeobj.cpp.

◆ f_thread_ms_part34()

static void * f_thread_ms_part34 ( NrnThread * nt )

static

Definition at line 1680 of file cvodeobj.cpp.

◆ f_thread_ms_part4()

static void * f_thread_ms_part4 ( NrnThread * nt )

static

Definition at line 1674 of file cvodeobj.cpp.

◆ f_thread_transfer_part1()

static void * f_thread_transfer_part1 ( NrnThread * nt )

static

Definition at line 1643 of file cvodeobj.cpp.

◆ f_thread_transfer_part2()

static void * f_thread_transfer_part2 ( NrnThread * nt )

static

Definition at line 1650 of file cvodeobj.cpp.

◆ hoc_get_last_pointer_symbol()

Symbol* hoc_get_last_pointer_symbol ( )

Definition at line 1780 of file code.cpp.

◆ hoc_symbol_tolerance()

void hoc_symbol_tolerance	(	Symbol *	sym,
		double	tol
	)

Definition at line 109 of file code2.cpp.

◆ jacobian()

static double jacobian ( void * v )

static

Definition at line 266 of file cvodeobj.cpp.

◆ linmod_extra_eqn_count()

int linmod_extra_eqn_count ( )

◆ maxorder()

static double maxorder ( void * v )

static

Definition at line 231 of file cvodeobj.cpp.

◆ maxstate_thread()

static void* maxstate_thread ( NrnThread * nt )

static

Definition at line 944 of file cvodeobj.cpp.

◆ maxstep()

static double maxstep ( void * v )

static

Definition at line 258 of file cvodeobj.cpp.

◆ mfree()

static void mfree ( CVodeMem cv_mem )

static

Definition at line 1584 of file cvodeobj.cpp.

◆ minit()

static int minit ( CVodeMem cv_mem )

static

Definition at line 1495 of file cvodeobj.cpp.

◆ minstep()

static double minstep ( void * v )

static

Definition at line 250 of file cvodeobj.cpp.

◆ msetup()

static int msetup	(	CVodeMem	cv_mem,
		int	convfail,
		N_Vector	ypred,
		N_Vector	fpred,
		booleantype *	jcurPtr,
		N_Vector	vtemp,
		N_Vector	vtemp2,
		N_Vector	vtemp3
	)

static

Definition at line 1500 of file cvodeobj.cpp.

◆ msolve()

static int msolve	(	CVodeMem	cv_mem,
		N_Vector	b,
		N_Vector	weight,
		N_Vector	ycur,
		N_Vector	fcur
	)

static

Definition at line 1517 of file cvodeobj.cpp.

◆ msolve_lvardt()

static int msolve_lvardt	(	CVodeMem	cv_mem,
		N_Vector	b,
		N_Vector	weight,
		N_Vector	ycur,
		N_Vector	fcur
	)

static

Definition at line 1542 of file cvodeobj.cpp.

◆ msolve_thread()

static void * msolve_thread ( NrnThread * nt )

static

Definition at line 1556 of file cvodeobj.cpp.

◆ msolve_thread_part1()

static void * msolve_thread_part1 ( NrnThread * nt )

static

Definition at line 1564 of file cvodeobj.cpp.

◆ msolve_thread_part2()

static void * msolve_thread_part2 ( NrnThread * nt )

static

Definition at line 1571 of file cvodeobj.cpp.

◆ msolve_thread_part3()

static void * msolve_thread_part3 ( NrnThread * nt )

static

Definition at line 1576 of file cvodeobj.cpp.

◆ n_record()

static double n_record ( void * v )

static

Definition at line 399 of file cvodeobj.cpp.

◆ n_remove()

static double n_remove ( void * v )

static

Definition at line 405 of file cvodeobj.cpp.

◆ ncs_netcons()

static double ncs_netcons ( void * v )

static

Definition at line 494 of file cvodeobj.cpp.

◆ netconlist()

static Object** netconlist ( void * v )

static

Definition at line 489 of file cvodeobj.cpp.

◆ nrn_atol()

static double nrn_atol ( void * v )

static

Definition at line 173 of file cvodeobj.cpp.

◆ nrn_cachevec()

void nrn_cachevec ( int b )

Definition at line 2127 of file treeset.cpp.

◆ nrn_diam_change_count()

static double nrn_diam_change_count ( void * v )

static

Definition at line 521 of file cvodeobj.cpp.

◆ nrn_extra_scatter_gather()

void nrn_extra_scatter_gather	(	int	direction,
		int	tid
	)

Definition at line 532 of file cvodeobj.cpp.

◆ nrn_hoc2fixed_step()

double nrn_hoc2fixed_step ( void * v )

Definition at line 4364 of file netcvode.cpp.

◆ nrn_hoc2fun()

double nrn_hoc2fun ( void * v )

Definition at line 4369 of file netcvode.cpp.

◆ nrn_hoc2gather_y()

double nrn_hoc2gather_y ( void * v )

Definition at line 4404 of file netcvode.cpp.

◆ nrn_hoc2scatter_y()

double nrn_hoc2scatter_y ( void * v )

Definition at line 4388 of file netcvode.cpp.

◆ nrn_modeltype()

int nrn_modeltype ( )

Definition at line 1949 of file treeset.cpp.

◆ nrn_structure_change_count()

static double nrn_structure_change_count ( void * v )

static

Definition at line 516 of file cvodeobj.cpp.

◆ ob2pntproc()

Point_process* ob2pntproc ( Object * ob )

Definition at line 88 of file hocmech.cpp.

◆ order()

static double order ( void * v )

static

Definition at line 239 of file cvodeobj.cpp.

◆ peq()

static double peq ( void * v )

static

Definition at line 471 of file cvodeobj.cpp.

◆ poolshrink()

static double poolshrink ( void * )

static

Definition at line 588 of file cvodeobj.cpp.

◆ queue_mode()

static double queue_mode ( void * v )

static

Definition at line 128 of file cvodeobj.cpp.

◆ re_init()

static double re_init ( void * v )

static

Definition at line 157 of file cvodeobj.cpp.

◆ rtol()

static double rtol ( void * v )

static

Definition at line 166 of file cvodeobj.cpp.

◆ simgraph_remove()

static double simgraph_remove ( void * v )

static

Definition at line 411 of file cvodeobj.cpp.

◆ solve()

static double solve ( void * v )

static

Definition at line 98 of file cvodeobj.cpp.

◆ spikestat()

static double spikestat ( void * v )

static

Definition at line 123 of file cvodeobj.cpp.

◆ state_magnitudes()

static double state_magnitudes ( void * v )

static

Definition at line 417 of file cvodeobj.cpp.

◆ statename()

static double statename ( void * v )

static

Definition at line 304 of file cvodeobj.cpp.

◆ states()

static double states ( void * v )

static

Definition at line 275 of file cvodeobj.cpp.

◆ static_mutex_for_at_time()

static void static_mutex_for_at_time ( bool b )

static

Definition at line 36 of file cvodeobj.cpp.

◆ statistics()

static double statistics ( void * v )

static

Definition at line 114 of file cvodeobj.cpp.

◆ stiff()

static double stiff ( void * v )

static

Definition at line 223 of file cvodeobj.cpp.

◆ store_events()

static double store_events ( void * v )

static

Definition at line 483 of file cvodeobj.cpp.

◆ tstop_event()

static double tstop_event ( void * v )

static

Definition at line 422 of file cvodeobj.cpp.

◆ use_daspk()

static double use_daspk ( void * v )

static

Definition at line 325 of file cvodeobj.cpp.

◆ use_fast_imem()

static double use_fast_imem ( void * v )

static

Definition at line 578 of file cvodeobj.cpp.

◆ use_local_dt()

static double use_local_dt ( void * v )

static

Definition at line 315 of file cvodeobj.cpp.

◆ use_long_double()

static double use_long_double ( void * v )

static

Definition at line 368 of file cvodeobj.cpp.

◆ use_mxb()

static double use_mxb ( void * v )

static

Definition at line 347 of file cvodeobj.cpp.

◆ use_parallel()

static double use_parallel ( void * v )

static

Definition at line 503 of file cvodeobj.cpp.

Variable Documentation

◆ cvode_active_

int cvode_active_

extern

Definition at line 163 of file fadvance.cpp.

◆ diam_change_cnt

int diam_change_cnt

Definition at line 77 of file cvodeobj.cpp.

◆ diam_changed

int diam_changed

extern

Definition at line 23 of file cabcode.cpp.

◆ dt

double dt

extern

Definition at line 76 of file netcvode.cpp.

◆ extra_scatterlist

ExtraScatterList* extra_scatterlist[2]

static

Definition at line 530 of file cvodeobj.cpp.

◆ f_cv_

Cvode* f_cv_

static

Definition at line 1591 of file cvodeobj.cpp.

◆ f_t_

realtype f_t_

static

Definition at line 1588 of file cvodeobj.cpp.

◆ f_y_

N_Vector f_y_

static

Definition at line 1589 of file cvodeobj.cpp.

◆ f_ydot_

N_Vector f_ydot_

static

Definition at line 1590 of file cvodeobj.cpp.

◆ hoc_return_type_code

int hoc_return_type_code

extern

Definition at line 42 of file code.cpp.

◆ maxstate_b

bool maxstate_b

static

Definition at line 942 of file cvodeobj.cpp.

◆ maxstate_cv

Cvode* maxstate_cv

static

Definition at line 943 of file cvodeobj.cpp.

◆ members

Member_func members[]

static

Definition at line 598 of file cvodeobj.cpp.

◆ msolve_b_

N_Vector msolve_b_

static

Definition at line 1514 of file cvodeobj.cpp.

◆ msolve_cv_

Cvode* msolve_cv_

static

Definition at line 1516 of file cvodeobj.cpp.

◆ msolve_ycur_

N_Vector msolve_ycur_

static

Definition at line 1515 of file cvodeobj.cpp.

◆ net_cvode_instance

NetCvode* net_cvode_instance

extern

Definition at line 27 of file cvodestb.cpp.

◆ nrn_is_artificial_

short * nrn_is_artificial_

extern

Definition at line 18 of file cell_group.cpp.

◆ nrn_multisplit_setup_

void(* nrn_multisplit_setup_) () ( )

extern

Definition at line 46 of file treeset.cpp.

◆ nrn_use_bin_queue_

bool nrn_use_bin_queue_

extern

Definition at line 273 of file netcvode.cpp.

◆ nrn_use_fifo_queue_

bool nrn_use_fifo_queue_

extern

Definition at line 270 of file netcvode.cpp.

◆ nrn_use_selfqueue_

int nrn_use_selfqueue_

extern

Definition at line 93 of file netcvode.cpp.

◆ nrnmpi_v_transfer_

void(* nrnmpi_v_transfer_) () ( )

extern

Definition at line 152 of file fadvance.cpp.

◆ nrnpy_hoccommand_exec

int(* nrnpy_hoccommand_exec) (Object *) ( Object * )

extern

Definition at line 17 of file objcmd.cpp.

◆ nrnpy_pysame

int(* nrnpy_pysame) (Object , Object )	(	Object *	,
		Object *
	)

Definition at line 526 of file cvodeobj.cpp.

◆ nrnthread_v_transfer_

void(* nrnthread_v_transfer_) (NrnThread *) ( NrnThread * nt )

extern

Definition at line 153 of file fadvance.cpp.

◆ omembers

Member_ret_obj_func omembers[] = {{"netconlist", netconlist}, {nullptr, nullptr}}

static

Definition at line 649 of file cvodeobj.cpp.

◆ pf_

CVRhsFn pf_

static

Definition at line 699 of file cvodeobj.cpp.

◆ secondorder

int secondorder

extern

Definition at line 96 of file init.cpp.

◆ structure_change_cnt

int structure_change_cnt

Definition at line 76 of file cvodeobj.cpp.

◆ t

double t

Definition at line 59 of file cvodeobj.cpp.

◆ use_cachevec

int use_cachevec

extern

Definition at line 63 of file treeset.cpp.

Macros

Typedefs

Functions

Variables

Macro Definition Documentation

◆ nt_dt

◆ nt_t

◆ SUCCESS

Typedef Documentation

◆ ExtraScatterList

Function Documentation

◆ abstol()

◆ acor()

◆ active()

◆ cache_efficient()

◆ condition_order()

◆ cons()

◆ current_method()

◆ cvode_fadvance()

◆ cvode_finitialize()

◆ Cvode_reg()

◆ dae_init_dteps()

◆ debug_event()

◆ destruct()

◆ dstates()

◆ error_weights()

◆ event_queue_info()

◆ extra_scatter_gather()

◆ extra_scatter_gather_remove()

◆ f_gvardt()

◆ f_lvardt()

◆ f_thread()

◆ f_thread_ms_part1()

◆ f_thread_ms_part2()

◆ f_thread_ms_part3()

◆ f_thread_ms_part34()

◆ f_thread_ms_part4()

◆ f_thread_transfer_part1()

◆ f_thread_transfer_part2()

◆ hoc_get_last_pointer_symbol()

◆ hoc_symbol_tolerance()

◆ jacobian()

◆ linmod_extra_eqn_count()

◆ maxorder()

◆ maxstate_thread()

◆ maxstep()

◆ mfree()

◆ minit()

◆ minstep()

◆ msetup()

◆ msolve()

◆ msolve_lvardt()

◆ msolve_thread()

◆ msolve_thread_part1()

◆ msolve_thread_part2()

◆ msolve_thread_part3()

◆ n_record()

◆ n_remove()

◆ ncs_netcons()

◆ netconlist()

◆ nrn_atol()

◆ nrn_cachevec()

◆ nrn_diam_change_count()

◆ nrn_extra_scatter_gather()

◆ nrn_hoc2fixed_step()

◆ nrn_hoc2fun()

◆ nrn_hoc2gather_y()

◆ nrn_hoc2scatter_y()

◆ nrn_modeltype()

◆ nrn_structure_change_count()

◆ ob2pntproc()

◆ order()

◆ peq()

◆ poolshrink()

◆ queue_mode()

◆ re_init()

◆ rtol()

◆ simgraph_remove()

◆ solve()

◆ spikestat()