#include <../../nrnconf.h>
#include <stdio.h>
#include <stdlib.h>
#include <errno.h>
#include <InterViews/resource.h>
#include <nrnoc2iv.h>
#include <nrniv_mf.h>
#include <nrnmpi.h>
#include <mymath.h>
#include <vector>
#include <map>
#include <unordered_map>
#include "partrans.h"

Classes
struct	TransferThreadData

struct	SourceViBuf

Macros
#define	PPList partrans_PPList

#define	HAVEWANT_t sgid_t

#define	HAVEWANT_alltoallv sgid_alltoallv

#define	HAVEWANT2Int MapSgid2Int

#define	CHKPNT fprintf(f, "chkpnt %d\n", chkpnt++);

Typedefs
typedef std::unordered_map< sgid_t, int >	MapSgid2Int

typedef std::unordered_map< Node , double >	MapNode2PDbl

typedef std::vector< double * >	DblPList

typedef std::vector< Node * >	NodePList

typedef std::vector< Point_process * >	PPList

typedef std::vector< int >	IntList

typedef std::vector< sgid_t >	SgidList

typedef std::vector< double * >	DblPVec

typedef std::map< sgid_t, std::pair< int, int > >	NonVSrcUpdateInfo

Functions
void	nrnmpi_source_var ()

void	nrnmpi_target_var ()

void	nrnmpi_setup_transfer ()

void	nrn_partrans_clear ()

static void	mpi_transfer ()

static void	thread_transfer (NrnThread *)

static void	thread_vi_compute (NrnThread *)

static void	mk_ttd ()

double *	nrn_recalc_ptr (double *)

void	nrn_partrans_update_ptrs ()

static void	delete_imped_info ()

static bool	non_vsrc_setinfo (sgid_t ssid, Node nd, double pv)

static double *	non_vsrc_update (Node *nd, int type, int ix)

static Node *	pv2node (sgid_t ssid, double *pv)

static int	compute_parray_index (Point_process pp, double ptv)

static double *	tar_ptr (Point_process *pp, int index)

static void	target_ptr_update ()

static void	rm_ttd ()

static void	rm_svibuf ()

static MapNode2PDbl *	mk_svibuf ()

void	pargap_jacobi_setup (int mode)

void	pargap_jacobi_rhs (double b, double x)

size_t	nrnbbcore_gap_write (const char path, int group_ids)

static SetupTransferInfo *	nrncore_transfer_info (int)

SetupTransferInfo *	nrn_get_partrans_setup_info (int ngroup, int cn_nthread, size_t cn_sidt_sz)

Variables
double	t

int	v_structure_change

int	structure_change_cnt

int	nrn_node_ptr_change_cnt_

const char *	bbcore_write_version

void(*	nrnthread_v_transfer_ )(NrnThread *)

void(*	nrnthread_vi_compute_ )(NrnThread *)

void(*	nrnmpi_v_transfer_ )()

void(*	nrn_mk_transfer_thread_data_ )()

static TransferThreadData *	transfer_thread_data_

static int	n_transfer_thread_data_

static SourceViBuf *	source_vi_buf_

static int	n_source_vi_buf_

static double *	insrc_buf_

static double *	outsrc_buf_

static double **	poutsrc_

static int *	poutsrc_indices_

static int	insrc_buf_size_

static int *	insrccnt_

static int *	insrcdspl_

static int	outsrc_buf_size_

static int *	outsrccnt_

static int *	outsrcdspl_

static MapSgid2Int	sid2insrc_

static DblPList	targets_

static SgidList	sgid2targets_

static PPList	target_pntlist_

static IntList	target_parray_index_

static NodePList	visources_

static SgidList	sgids_

static MapSgid2Int	sgid2srcindex_

static NonVSrcUpdateInfo	non_vsrc_update_info_

static int	max_targets_

static int	target_ptr_update_cnt_ = 0

static int	target_ptr_need_update_cnt_ = 0

static int	vptr_change_cnt_ = 0

static bool	is_setup_

static int	imped_current_type_count_

static int *	imped_current_type_

static Memb_list **	imped_current_ml_

static double *	vgap1

static double *	vgap2

static int	imped_change_cnt

Macro Definition Documentation

◆ CHKPNT

#define CHKPNT fprintf(f, "chkpnt %d\n", chkpnt++);

◆ HAVEWANT2Int

#define HAVEWANT2Int MapSgid2Int

Definition at line 670 of file partrans.cpp.

◆ HAVEWANT_alltoallv

#define HAVEWANT_alltoallv sgid_alltoallv

Definition at line 669 of file partrans.cpp.

◆ HAVEWANT_t

#define HAVEWANT_t sgid_t

Definition at line 668 of file partrans.cpp.

◆ PPList

#define PPList partrans_PPList

Definition at line 173 of file partrans.cpp.

Typedef Documentation

◆ DblPList

typedef std::vector<double*> DblPList

Definition at line 171 of file partrans.cpp.

◆ DblPVec

typedef std::vector<double*> DblPVec

Definition at line 195 of file partrans.cpp.

◆ IntList

typedef std::vector<int> IntList

Definition at line 175 of file partrans.cpp.

◆ MapNode2PDbl

typedef std::unordered_map<Node*, double*> MapNode2PDbl

Definition at line 170 of file partrans.cpp.

◆ MapSgid2Int

typedef std::unordered_map<sgid_t, int> MapSgid2Int

Definition at line 169 of file partrans.cpp.

◆ NodePList

typedef std::vector<Node*> NodePList

Definition at line 172 of file partrans.cpp.

◆ NonVSrcUpdateInfo

typedef std::map<sgid_t, std::pair<int, int> > NonVSrcUpdateInfo

Definition at line 200 of file partrans.cpp.

◆ PPList

typedef std::vector<Point_process*> PPList

Definition at line 174 of file partrans.cpp.

◆ SgidList

typedef std::vector<sgid_t> SgidList

Definition at line 176 of file partrans.cpp.

Function Documentation

◆ compute_parray_index()

static int compute_parray_index	(	Point_process *	pp,
		double *	ptv
	)

static

Definition at line 290 of file partrans.cpp.

◆ delete_imped_info()

static void delete_imped_info ( )

static

Definition at line 218 of file partrans.cpp.

◆ mk_svibuf()

static MapNode2PDbl* mk_svibuf ( )

static

Definition at line 401 of file partrans.cpp.

◆ mk_ttd()

static void mk_ttd ( )

static

Definition at line 479 of file partrans.cpp.

◆ mpi_transfer()

void mpi_transfer ( )

static

Definition at line 591 of file partrans.cpp.

◆ non_vsrc_setinfo()

static bool non_vsrc_setinfo	(	sgid_t	ssid,
		Node *	nd,
		double *	pv
	)

static

Definition at line 229 of file partrans.cpp.

◆ non_vsrc_update()

static double* non_vsrc_update	(	Node *	nd,
		int	type,
		int	ix
	)

static

Definition at line 240 of file partrans.cpp.

◆ nrn_get_partrans_setup_info()

SetupTransferInfo* nrn_get_partrans_setup_info	(	int	ngroup,
		int	cn_nthread,
		size_t	cn_sidt_sz
	)

Definition at line 1031 of file partrans.cpp.

◆ nrn_partrans_clear()

void nrn_partrans_clear ( )

Definition at line 845 of file partrans.cpp.

◆ nrn_partrans_update_ptrs()

void nrn_partrans_update_ptrs ( )

Definition at line 345 of file partrans.cpp.

◆ nrn_recalc_ptr()

double* nrn_recalc_ptr ( double * )

Definition at line 2158 of file treeset.cpp.

◆ nrnbbcore_gap_write()

size_t nrnbbcore_gap_write	(	const char *	path,
		int *	group_ids
	)

Definition at line 1039 of file partrans.cpp.

◆ nrncore_transfer_info()

static SetupTransferInfo * nrncore_transfer_info ( int cn_nthread )

static

Definition at line 1086 of file partrans.cpp.

◆ nrnmpi_setup_transfer()

void nrnmpi_setup_transfer ( )

Definition at line 675 of file partrans.cpp.

◆ nrnmpi_source_var()

void nrnmpi_source_var ( )

Definition at line 272 of file partrans.cpp.

◆ nrnmpi_target_var()

void nrnmpi_target_var ( )

Definition at line 319 of file partrans.cpp.

◆ pargap_jacobi_rhs()

void pargap_jacobi_rhs	(	double *	b,
		double *	x
	)

Definition at line 951 of file partrans.cpp.

◆ pargap_jacobi_setup()

void pargap_jacobi_setup ( int mode )

Definition at line 873 of file partrans.cpp.

◆ pv2node()

static Node* pv2node	(	sgid_t	ssid,
		double *	pv
	)

static

Definition at line 254 of file partrans.cpp.

◆ rm_svibuf()

static void rm_svibuf ( )

static

Definition at line 386 of file partrans.cpp.

◆ rm_ttd()

static void rm_ttd ( )

static

Definition at line 371 of file partrans.cpp.

◆ tar_ptr()

static double* tar_ptr	(	Point_process *	pp,
		int	index
	)

static

Definition at line 298 of file partrans.cpp.

◆ target_ptr_update()

static void target_ptr_update ( )

static

Definition at line 302 of file partrans.cpp.

◆ thread_transfer()

void thread_transfer ( NrnThread * _nt )

static

Definition at line 619 of file partrans.cpp.

◆ thread_vi_compute()

void thread_vi_compute ( NrnThread * _nt )

static

Definition at line 577 of file partrans.cpp.

Variable Documentation

◆ bbcore_write_version

const char* bbcore_write_version

Definition at line 25 of file nrncore_io.cpp.

◆ imped_change_cnt

int imped_change_cnt

static

Definition at line 871 of file partrans.cpp.

◆ imped_current_ml_

Memb_list** imped_current_ml_

static

Definition at line 216 of file partrans.cpp.

◆ imped_current_type_

int* imped_current_type_

static

Definition at line 215 of file partrans.cpp.

◆ imped_current_type_count_

int imped_current_type_count_

static

Definition at line 214 of file partrans.cpp.

◆ insrc_buf_

double* insrc_buf_

static

Definition at line 178 of file partrans.cpp.

◆ insrc_buf_size_

int insrc_buf_size_

static

Definition at line 182 of file partrans.cpp.

◆ insrccnt_

int * insrccnt_

static

Definition at line 182 of file partrans.cpp.

◆ insrcdspl_

int * insrcdspl_

static

Definition at line 182 of file partrans.cpp.

◆ is_setup_

bool is_setup_

static

Definition at line 210 of file partrans.cpp.

◆ max_targets_

int max_targets_

static

Definition at line 204 of file partrans.cpp.

◆ n_source_vi_buf_

int n_source_vi_buf_

static

Definition at line 167 of file partrans.cpp.

◆ n_transfer_thread_data_

int n_transfer_thread_data_

static

Definition at line 158 of file partrans.cpp.

◆ non_vsrc_update_info_

NonVSrcUpdateInfo non_vsrc_update_info_

static

Definition at line 201 of file partrans.cpp.

◆ nrn_mk_transfer_thread_data_

void(* nrn_mk_transfer_thread_data_) ()

Definition at line 46 of file multicore.cpp.

◆ nrn_node_ptr_change_cnt_

int nrn_node_ptr_change_cnt_

Definition at line 82 of file treeset.cpp.

◆ nrnmpi_v_transfer_

void(* nrnmpi_v_transfer_) ()

Definition at line 147 of file fadvance.cpp.

◆ nrnthread_v_transfer_

void(* nrnthread_v_transfer_) (NrnThread *)

Definition at line 148 of file fadvance.cpp.

◆ nrnthread_vi_compute_

void(* nrnthread_vi_compute_) (NrnThread *)

Definition at line 150 of file fadvance.cpp.

◆ outsrc_buf_

double* outsrc_buf_

static

Definition at line 179 of file partrans.cpp.

◆ outsrc_buf_size_

int outsrc_buf_size_

static

Definition at line 183 of file partrans.cpp.

◆ outsrccnt_

int * outsrccnt_

static

Definition at line 183 of file partrans.cpp.

◆ outsrcdspl_

int * outsrcdspl_

static

Definition at line 183 of file partrans.cpp.

◆ poutsrc_

double** poutsrc_

static

Definition at line 180 of file partrans.cpp.

◆ poutsrc_indices_

int* poutsrc_indices_

static

Definition at line 181 of file partrans.cpp.

◆ sgid2srcindex_

MapSgid2Int sgid2srcindex_

static

Definition at line 198 of file partrans.cpp.

◆ sgid2targets_

SgidList sgid2targets_

static

Definition at line 190 of file partrans.cpp.

◆ sgids_

SgidList sgids_

static

Definition at line 197 of file partrans.cpp.

◆ sid2insrc_

MapSgid2Int sid2insrc_

static

Definition at line 184 of file partrans.cpp.

◆ source_vi_buf_

SourceViBuf* source_vi_buf_

static

Definition at line 166 of file partrans.cpp.

◆ structure_change_cnt

int structure_change_cnt

Definition at line 57 of file partrans.cpp.

◆ t

double t

Definition at line 123 of file init.cpp.

◆ target_parray_index_

IntList target_parray_index_

static

Definition at line 192 of file partrans.cpp.

◆ target_pntlist_

PPList target_pntlist_

static

Definition at line 191 of file partrans.cpp.

◆ target_ptr_need_update_cnt_

int target_ptr_need_update_cnt_ = 0

static

Definition at line 207 of file partrans.cpp.

◆ target_ptr_update_cnt_

int target_ptr_update_cnt_ = 0

static

Definition at line 206 of file partrans.cpp.

◆ targets_

DblPList targets_

static

Definition at line 189 of file partrans.cpp.

◆ transfer_thread_data_

TransferThreadData* transfer_thread_data_

static

Definition at line 157 of file partrans.cpp.

◆ v_structure_change

int v_structure_change

Definition at line 56 of file partrans.cpp.

◆ vgap1

double* vgap1

static

Definition at line 870 of file partrans.cpp.

◆ vgap2

double * vgap2

static

Definition at line 870 of file partrans.cpp.

◆ visources_

NodePList visources_

static

Definition at line 196 of file partrans.cpp.

◆ vptr_change_cnt_

int vptr_change_cnt_ = 0

static

Definition at line 208 of file partrans.cpp.

Classes

Macros

Typedefs

Functions

Variables

Macro Definition Documentation

◆ CHKPNT

◆ HAVEWANT2Int

◆ HAVEWANT_alltoallv

◆ HAVEWANT_t

◆ PPList

Typedef Documentation

◆ DblPList

◆ DblPVec

◆ IntList

◆ MapNode2PDbl

◆ MapSgid2Int

◆ NodePList

◆ NonVSrcUpdateInfo

◆ PPList

◆ SgidList

Function Documentation

◆ compute_parray_index()

◆ delete_imped_info()

◆ mk_svibuf()

◆ mk_ttd()

◆ mpi_transfer()

◆ non_vsrc_setinfo()

◆ non_vsrc_update()

◆ nrn_get_partrans_setup_info()

◆ nrn_partrans_clear()

◆ nrn_partrans_update_ptrs()

◆ nrn_recalc_ptr()

◆ nrnbbcore_gap_write()

◆ nrncore_transfer_info()

◆ nrnmpi_setup_transfer()

◆ nrnmpi_source_var()

◆ nrnmpi_target_var()

◆ pargap_jacobi_rhs()

◆ pargap_jacobi_setup()

◆ pv2node()

◆ rm_svibuf()

◆ rm_ttd()

◆ tar_ptr()

◆ target_ptr_update()

◆ thread_transfer()

◆ thread_vi_compute()

Variable Documentation

◆ bbcore_write_version

◆ imped_change_cnt

◆ imped_current_ml_

◆ imped_current_type_

◆ imped_current_type_count_

◆ insrc_buf_

◆ insrc_buf_size_

◆ insrccnt_

◆ insrcdspl_

◆ is_setup_

◆ max_targets_

◆ n_source_vi_buf_

◆ n_transfer_thread_data_

◆ non_vsrc_update_info_

◆ nrn_mk_transfer_thread_data_

◆ nrn_node_ptr_change_cnt_

◆ nrnmpi_v_transfer_

◆ nrnthread_v_transfer_

◆ nrnthread_vi_compute_

◆ outsrc_buf_

◆ outsrc_buf_size_

◆ outsrccnt_

◆ outsrcdspl_

◆ poutsrc_

◆ poutsrc_indices_

◆ sgid2srcindex_

◆ sgid2targets_

◆ sgids_

◆ sid2insrc_

◆ source_vi_buf_

◆ structure_change_cnt

◆ t