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NEURON
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#include <../../nrnconf.h>#include <stdio.h>#include <stdlib.h>#include <string.h>#include <OS/list.h>#include "ivoc.h"#include "nrnoc2iv.h"#include "parse.hpp"#include "ivocvect.h"#include "neuron_Neuron.h"#include "njvm.h"#include "njreg.h"#include "neuron_Redirect.h"#include "njredirreg.h"Go to the source code of this file.
Macros | |
| #define | call_ob_proc hoc_call_ob_proc |
| #define | ncs 20 |
Functions | |
| char * | nrn_dot2underbar (const char *) |
| JNI code for Neuron.java C implementations of Java native methods. More... | |
| jobject | nj_encapsulate (Object *) |
| a hoc object must be encapsulated in a java object for use in java. More... | |
| Object ** | nj_j2hObject (jobject, int) |
| declarePtrList (NJSymList, Symbol) extern NJSymList *nrn_jclass_symlist | |
| void * | nrnjava_pwm_listen (const char *, Object *) |
| void | nrnjava_pwm_event (size_t, int, int, int, int, int) |
| Symbol * | java2nrn_class (const char *classname, int classindex, const char *methods) |
| Create a hoc class from a java one. More... | |
| double | hoc_integer (double) |
| Object * | hoc_new_object (Symbol *, void *) |
| Object * | hoc_newobj1 (Symbol *, int) |
| Object ** | hoc_objpop () |
| char ** | hoc_strpop () |
| void | hoc_tobj_unref (Object **) |
| void | nrnjni_registration (jclass neuronCls) |
| void | nrnjni_redirreg (jclass c) |
| static void | illegalArg (JNIEnv *env, const char *s) |
| JNIEXPORT jstring JNICALL | Java_neuron_Neuron_getHocStringArg (JNIEnv *env, jclass cls, jint idx) |
| JNIEXPORT jdouble JNICALL | Java_neuron_Neuron_getHocDoubleArg (JNIEnv *env, jclass cls, jint idx, jint type) |
| static jobject | h2jObject (Object *o) |
| JNIEXPORT jobject JNICALL | Java_neuron_Neuron_getHocObjectArg (JNIEnv *env, jclass cl, jint i, jthrowable e) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_hocObjectUnref (JNIEnv *, jclass, jlong i) |
| JNIEXPORT jlong JNICALL | Java_neuron_Neuron_getVarPointer (JNIEnv *, jclass) |
| JNIEXPORT jdouble JNICALL | Java_neuron_Neuron_getVal (JNIEnv *, jclass, jlong p) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_setVal (JNIEnv *, jclass, jlong p, jdouble d) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_java2nrnClass (JNIEnv *env, jclass cls, jstring classname, jint classindex, jstring methods) |
| JNIEXPORT jboolean JNICALL | Java_neuron_Neuron_execute (JNIEnv *env, jclass, jstring statement) |
| JNIEXPORT jint JNICALL | Java_neuron_Neuron_getHocArgType (JNIEnv *env, jclass, jint i) |
| JNIEXPORT jstring JNICALL | Java_neuron_Neuron_getHocArgSig (JNIEnv *env, jclass) |
| JNIEXPORT jlong JNICALL | Java_neuron_Neuron_vectorNew (JNIEnv *env, jclass, jint size) |
| JNIEXPORT jint JNICALL | Java_neuron_Neuron_vectorSize (JNIEnv *, jclass, jlong jc) |
| static void | outOfBounds (JNIEnv *env) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_vectorSet (JNIEnv *env, jclass, jlong jc, jint i, jdouble x) |
| JNIEXPORT jdouble JNICALL | Java_neuron_Neuron_vectorGet (JNIEnv *env, jclass, jlong jc, jint i) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_vectorToHoc (JNIEnv *env, jclass, jlong jc, jdoubleArray ja, jint size) |
| JNIEXPORT jdoubleArray JNICALL | Java_neuron_Neuron_vectorFromHoc (JNIEnv *env, jclass, jlong jc) |
| JNIEXPORT jlong JNICALL | Java_neuron_Neuron_cppPointer (JNIEnv *, jclass, jlong jc) |
| JNIEXPORT jstring JNICALL | Java_neuron_Neuron_hocObjectName (JNIEnv *env, jclass, jlong jc) |
| JNIEXPORT jlong JNICALL | Java_neuron_Neuron_getNewHObject (JNIEnv *env, jclass, jstring name, jint narg) |
| JNIEXPORT jdouble JNICALL | Java_neuron_Neuron_hDoubleMethod__Ljava_lang_String_2I (JNIEnv *env, jclass, jstring name, jint narg) |
| JNIEXPORT jdouble JNICALL | Java_neuron_Neuron_hDoubleMethod__JJI (JNIEnv *env, jclass, jlong jc, jlong mid, jint narg) |
| JNIEXPORT jstring JNICALL | Java_neuron_Neuron_hCharsMethod (JNIEnv *env, jclass, jlong jc, jlong mid, jint narg) |
| JNIEXPORT jobject JNICALL | Java_neuron_Neuron_hObjectMethod (JNIEnv *env, jclass, jlong jc, jlong mid, jint narg) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_pushArgD (JNIEnv *, jclass, jdouble x) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_pushArgS (JNIEnv *env, jclass, jstring js) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_pushArgO (JNIEnv *env, jclass, jobject jo, jint type) |
| JNIEXPORT jlong JNICALL | Java_neuron_Neuron_methodID (JNIEnv *env, jclass, jlong jc, jstring name) |
| JNIEXPORT jlong JNICALL | Java_neuron_Neuron_pwmListen (JNIEnv *env, jclass, jstring title, jobject jo, jint type) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_pwmEvent (JNIEnv *env, jclass, jlong jwc, jint type, jint l, jint t, jint w, jint h) |
| JNIEXPORT jstring JNICALL | Java_neuron_Neuron_sGet (JNIEnv *env, jclass, jstring js) |
| JNIEXPORT jobject JNICALL | Java_neuron_Neuron_oGet (JNIEnv *env, jclass, jstring js) |
| JNIEXPORT jstring JNICALL | Java_neuron_Neuron_hGetStringField (JNIEnv *env, jclass, jlong v, jstring js) |
| JNIEXPORT jobject JNICALL | Java_neuron_Neuron_hGetObjectField (JNIEnv *env, jclass, jlong v, jstring js) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_hSetObjectField__JLjava_lang_String_2Ljava_lang_Object_2I (JNIEnv *env, jclass, jlong v, jstring js, jobject joval, jint type) |
| JNIEXPORT void JNICALL | Java_neuron_Neuron_hSetObjectField__Ljava_lang_String_2Ljava_lang_Object_2I (JNIEnv *env, jclass, jstring js, jobject joval, jint type) |
| JNIEXPORT void JNICALL | Java_neuron_Redirect_consoleWrite (JNIEnv *env, jclass, jint fd, jint b) |
Variables | |
| Symbol * | nrn_jobj_sym |
| Symbol * | nrn_vec_sym |
| Symlist * | hoc_top_level_symlist |
| Neuron/Java Interface code. More... | |
| double * | hoc_varpointer |
| Objectdata * | hoc_top_level_data |
| #define call_ob_proc hoc_call_ob_proc |
Definition at line 55 of file nrnjni.cpp.
| #define ncs 20 |
| declarePtrList | ( | NJSymList | , |
| Symbol | |||
| ) |
|
static |
Definition at line 121 of file nrnjni.cpp.
| double hoc_integer | ( | double | ) |
Definition at line 465 of file hoc_oop.cpp.
Definition at line 576 of file hoc_oop.cpp.
|
static |
Definition at line 77 of file nrnjni.cpp.
Create a hoc class from a java one.
| classindex | : +ve id for class (0,1, ...) |
Definition at line 1628 of file hoc_oop.cpp.
| JNIEXPORT jlong JNICALL Java_neuron_Neuron_cppPointer | ( | JNIEnv * | , |
| jclass | , | ||
| jlong | jc | ||
| ) |
Definition at line 320 of file nrnjni.cpp.
| JNIEXPORT jboolean JNICALL Java_neuron_Neuron_execute | ( | JNIEnv * | env, |
| jclass | , | ||
| jstring | statement | ||
| ) |
Definition at line 206 of file nrnjni.cpp.
| JNIEXPORT jstring JNICALL Java_neuron_Neuron_getHocArgSig | ( | JNIEnv * | env, |
| jclass | |||
| ) |
Definition at line 234 of file nrnjni.cpp.
| JNIEXPORT jint JNICALL Java_neuron_Neuron_getHocArgType | ( | JNIEnv * | env, |
| jclass | , | ||
| jint | i | ||
| ) |
Definition at line 219 of file nrnjni.cpp.
| JNIEXPORT jdouble JNICALL Java_neuron_Neuron_getHocDoubleArg | ( | JNIEnv * | env, |
| jclass | cls, | ||
| jint | idx, | ||
| jint | type | ||
| ) |
Definition at line 100 of file nrnjni.cpp.
| JNIEXPORT jobject JNICALL Java_neuron_Neuron_getHocObjectArg | ( | JNIEnv * | env, |
| jclass | cl, | ||
| jint | i, | ||
| jthrowable | e | ||
| ) |
Definition at line 140 of file nrnjni.cpp.
| JNIEXPORT jstring JNICALL Java_neuron_Neuron_getHocStringArg | ( | JNIEnv * | env, |
| jclass | cls, | ||
| jint | idx | ||
| ) |
Definition at line 81 of file nrnjni.cpp.
| JNIEXPORT jlong JNICALL Java_neuron_Neuron_getNewHObject | ( | JNIEnv * | env, |
| jclass | , | ||
| jstring | name, | ||
| jint | narg | ||
| ) |
Definition at line 338 of file nrnjni.cpp.
| JNIEXPORT jdouble JNICALL Java_neuron_Neuron_getVal | ( | JNIEnv * | , |
| jclass | , | ||
| jlong | p | ||
| ) |
Definition at line 177 of file nrnjni.cpp.
| JNIEXPORT jlong JNICALL Java_neuron_Neuron_getVarPointer | ( | JNIEnv * | , |
| jclass | |||
| ) |
Definition at line 170 of file nrnjni.cpp.
| JNIEXPORT jstring JNICALL Java_neuron_Neuron_hCharsMethod | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc, | ||
| jlong | mid, | ||
| jint | narg | ||
| ) |
Definition at line 376 of file nrnjni.cpp.
| JNIEXPORT jdouble JNICALL Java_neuron_Neuron_hDoubleMethod__JJI | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc, | ||
| jlong | mid, | ||
| jint | narg | ||
| ) |
Definition at line 365 of file nrnjni.cpp.
| JNIEXPORT jdouble JNICALL Java_neuron_Neuron_hDoubleMethod__Ljava_lang_String_2I | ( | JNIEnv * | env, |
| jclass | , | ||
| jstring | name, | ||
| jint | narg | ||
| ) |
Definition at line 355 of file nrnjni.cpp.
| JNIEXPORT jobject JNICALL Java_neuron_Neuron_hGetObjectField | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | v, | ||
| jstring | js | ||
| ) |
Definition at line 515 of file nrnjni.cpp.
| JNIEXPORT jstring JNICALL Java_neuron_Neuron_hGetStringField | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | v, | ||
| jstring | js | ||
| ) |
Definition at line 504 of file nrnjni.cpp.
| JNIEXPORT jobject JNICALL Java_neuron_Neuron_hObjectMethod | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc, | ||
| jlong | mid, | ||
| jint | narg | ||
| ) |
Definition at line 388 of file nrnjni.cpp.
| JNIEXPORT jstring JNICALL Java_neuron_Neuron_hocObjectName | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc | ||
| ) |
Definition at line 330 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_hocObjectUnref | ( | JNIEnv * | , |
| jclass | , | ||
| jlong | i | ||
| ) |
Definition at line 163 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_hSetObjectField__JLjava_lang_String_2Ljava_lang_Object_2I | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | v, | ||
| jstring | js, | ||
| jobject | joval, | ||
| jint | type | ||
| ) |
Definition at line 528 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_hSetObjectField__Ljava_lang_String_2Ljava_lang_Object_2I | ( | JNIEnv * | env, |
| jclass | , | ||
| jstring | js, | ||
| jobject | joval, | ||
| jint | type | ||
| ) |
Definition at line 546 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_java2nrnClass | ( | JNIEnv * | env, |
| jclass | cls, | ||
| jstring | classname, | ||
| jint | classindex, | ||
| jstring | methods | ||
| ) |
Definition at line 188 of file nrnjni.cpp.
| JNIEXPORT jlong JNICALL Java_neuron_Neuron_methodID | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc, | ||
| jstring | name | ||
| ) |
Definition at line 450 of file nrnjni.cpp.
| JNIEXPORT jobject JNICALL Java_neuron_Neuron_oGet | ( | JNIEnv * | env, |
| jclass | , | ||
| jstring | js | ||
| ) |
Definition at line 492 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_pushArgD | ( | JNIEnv * | , |
| jclass | , | ||
| jdouble | x | ||
| ) |
Definition at line 402 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_pushArgO | ( | JNIEnv * | env, |
| jclass | , | ||
| jobject | jo, | ||
| jint | type | ||
| ) |
Definition at line 437 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_pushArgS | ( | JNIEnv * | env, |
| jclass | , | ||
| jstring | js | ||
| ) |
Definition at line 408 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_pwmEvent | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jwc, | ||
| jint | type, | ||
| jint | l, | ||
| jint | t, | ||
| jint | w, | ||
| jint | h | ||
| ) |
Definition at line 473 of file nrnjni.cpp.
| JNIEXPORT jlong JNICALL Java_neuron_Neuron_pwmListen | ( | JNIEnv * | env, |
| jclass | , | ||
| jstring | title, | ||
| jobject | jo, | ||
| jint | type | ||
| ) |
Definition at line 460 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_setVal | ( | JNIEnv * | , |
| jclass | , | ||
| jlong | p, | ||
| jdouble | d | ||
| ) |
Definition at line 183 of file nrnjni.cpp.
| JNIEXPORT jstring JNICALL Java_neuron_Neuron_sGet | ( | JNIEnv * | env, |
| jclass | , | ||
| jstring | js | ||
| ) |
Definition at line 482 of file nrnjni.cpp.
| JNIEXPORT jdoubleArray JNICALL Java_neuron_Neuron_vectorFromHoc | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc | ||
| ) |
Definition at line 310 of file nrnjni.cpp.
| JNIEXPORT jdouble JNICALL Java_neuron_Neuron_vectorGet | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc, | ||
| jint | i | ||
| ) |
Definition at line 291 of file nrnjni.cpp.
| JNIEXPORT jlong JNICALL Java_neuron_Neuron_vectorNew | ( | JNIEnv * | env, |
| jclass | , | ||
| jint | size | ||
| ) |
Definition at line 258 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_vectorSet | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc, | ||
| jint | i, | ||
| jdouble | x | ||
| ) |
Definition at line 280 of file nrnjni.cpp.
| JNIEXPORT jint JNICALL Java_neuron_Neuron_vectorSize | ( | JNIEnv * | , |
| jclass | , | ||
| jlong | jc | ||
| ) |
Definition at line 269 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Neuron_vectorToHoc | ( | JNIEnv * | env, |
| jclass | , | ||
| jlong | jc, | ||
| jdoubleArray | ja, | ||
| jint | size | ||
| ) |
Definition at line 302 of file nrnjni.cpp.
| JNIEXPORT void JNICALL Java_neuron_Redirect_consoleWrite | ( | JNIEnv * | env, |
| jclass | , | ||
| jint | fd, | ||
| jint | b | ||
| ) |
Definition at line 563 of file nrnjni.cpp.
| jobject nj_encapsulate | ( | Object * | ho | ) |
a hoc object must be encapsulated in a java object for use in java.
The generic case for hoc objects opaque to java is HocObject and it's java id for this purpose is 0. Other kinds of hoc object which java should be able to do something with, eg. Vector all have a corresponding java class that extends HocObject and an id known here and in Neuron.java.
Definition at line 486 of file nrnjava.cpp.
Definition at line 408 of file nrnjava.cpp.
| char* nrn_dot2underbar | ( | const char * | ) |
JNI code for Neuron.java C implementations of Java native methods.
Definition at line 240 of file nrnjava.cpp.
| void nrnjni_redirreg | ( | jclass | c | ) |
Definition at line 71 of file nrnjni.cpp.
| void nrnjni_registration | ( | jclass | neuronCls | ) |
Definition at line 65 of file nrnjni.cpp.
|
static |
Definition at line 275 of file nrnjni.cpp.
| Objectdata* hoc_top_level_data |
Definition at line 134 of file hoc_oop.cpp.
| Symlist* hoc_top_level_symlist |
Neuron/Java Interface code.
Modified by Michael Hines The Java to Neuron JNIEXPORT functions for Neuron.java have been collected in nrnjni.cpp. This file now mostly supports the Neuron to Java direction
Definition at line 41 of file symbol.cpp.
| double* hoc_varpointer |
Definition at line 262 of file hoc_init.cpp.
| Symbol* nrn_jobj_sym |
Definition at line 88 of file nrnjava.cpp.
| Symbol* nrn_vec_sym |
Definition at line 89 of file nrnjava.cpp.