nrn_ansi.h File Reference

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Functions
void	hoc_register_limits (int, HocParmLimits *)
void	hoc_register_units (int, HocParmUnits *)
void	hoc_register_dparam_semantics (int, int, const char *)
void	add_nrn_fornetcons (int, int)
void	hoc_register_tolerance (int, HocStateTolerance *, Symbol ***)
void	oc_save_cabcode (int *a1, int *a2)
void	oc_restore_cabcode (int *a1, int *a2)
void	modl_reg (void)
	Needed for compilation. More...
void	_nrn_free_fornetcon (void **)
double	nrn_call_mech_func (Symbol *, int narg, Prop *, int type)
Prop *	nrn_mechanism (int type, Node *)
void	_nrn_free_watch (Datum *, int, int)
	Called by Point_process destructor in translated mod file. More...
void	_nrn_watch_activate (Datum *, double(*)(Point_process *), int, Point_process *, int, double)
void	_nrn_watch_allocate (Datum *, double(*)(Point_process *), int, Point_process *, double nrflag)
	Introduced so corenrn->nrn can request the mod file to make sure all WatchCondition are allocated. More...
void	hoc_reg_ba (int, nrn_bamech_t, int)
int	nrn_pointing (double *)
void	nrn_pushsec (Section *)
void	nrn_popsec (void)
Section *	chk_access (void)
Node *	node_exact (Section *, double)
int	nrn_isecstack (void)
void	nrn_secstack (int)
void	new_sections (Object *ob, Symbol *sym, hoc_Item **pitm, int size)
void	cable_prop_assign (Symbol *sym, double *pd, int op)
void	nrn_parent_info (Section *s)
void	nrn_relocate_old_points (Section *oldsec, Node *oldnode, Section *sec, Node *node)
int	nrn_at_beginning (Section *sec)
void	nrn_node_destruct1 (Node *)
void	mech_insert1 (Section *, int)
void	extcell_2d_alloc (Section *sec)
int	nrn_is_ion (int)
void	single_prop_free (Prop *)
void	prop_free (Prop **)
int	can_change_morph (Section *)
void	nrn_area_ri (Section *sec)
void	nrn_diam_change (Section *)
void	sec_free (hoc_Item *)
int	node_index (Section *sec, double x)
void	extcell_node_create (Node *)
void	extnode_free_elements (Extnode *)
const char *	sec_and_position (Section *sec, Node *nd)
void	section_order (void)
Section *	nrn_sec_pop (void)
Node *	node_ptr (Section *sec, double x, double *parea)
double *	nrn_vext_pd (Symbol *s, int indx, Node *nd)
double *	nrnpy_dprop (Symbol *s, int indx, Section *sec, short inode, int *err)
void	nrn_disconnect (Section *)
void	mech_uninsert1 (Section *sec, Symbol *s)
Object *	nrn_sec2cell (Section *)
int	nrn_sec2cell_equals (Section *, Object *)
double *	dprop (Symbol *s, int indx, Section *sec, short inode)
void	nrn_initcode ()
int	segment_limits (double *)
void	second_order_cur (NrnThread *)
void	hoc_register_dparam_size (int, int)
void	setup_topology (void)
int	nrn_errno_check (int)
void	long_difus_solve (int method, NrnThread *nt)
void	nrn_fihexec (int)
int	special_pnt_call (Object *, Symbol *, int)
void	ob_sec_access_push (hoc_Item *)
void	nrn_mk_prop_pools (int)
void	SectionList_reg (void)
void	SectionRef_reg (void)
void	hoc_symbol_tolerance (Symbol *, double)
void	node_destruct (Node **, int)
void	nrn_sec_ref (Section **, Section *)
void	hoc_level_pushsec (Section *)
double	nrn_ra (Section *)
int	node_index_exact (Section *, double)
void	nrn_cachevec (int)
void	nrn_ba (NrnThread *, int)
void	nrniv_recalc_ptrs (void)
void	nrn_recalc_ptrvector (void)
void	nrn_recalc_ptrs (double *(*r)(double *))
void	nrn_rhs_ext (NrnThread *)
void	nrn_setup_ext (NrnThread *)
void	nrn_cap_jacob (NrnThread *, Memb_list *)
void	clear_point_process_struct (Prop *p)
void	ext_con_coef (void)
void	nrn_multisplit_ptr_update (void)
void	nrn_cache_prop_realloc ()
void	nrn_use_daspk (int)
void	nrn_update_ps2nt (void)
void	activstim_rhs (void)
void	activclamp_rhs (void)
void	activclamp_lhs (void)
void	activsynapse_rhs (void)
void	activsynapse_lhs (void)
void	stim_prepare (void)
void	clamp_prepare (void)
void	synapse_prepare (void)
void	v_setup_vectors (void)
void	section_ref (Section *)
void	section_unref (Section *)
const char *	secname (Section *)
const char *	nrn_sec2pysecname (Section *)
void	nrn_rangeconst (Section *, Symbol *, double *value, int op)
int	nrn_exists (Symbol *, Node *)
double *	nrn_rangepointer (Section *, Symbol *, double x)
double *	cable_prop_eval_pointer (Symbol *)
char *	hoc_section_pathname (Section *)
double	nrn_arc_position (Section *, Node *)
double	node_dist (Section *, Node *)
double	nrn_section_orientation (Section *)
double	nrn_connection_position (Section *)
Section *	nrn_trueparent (Section *)
double	topol_distance (Section *, Node *, Section *, Node *, Section **, Node **)
int	arc0at0 (Section *)
void	nrn_clear_mark (void)
short	nrn_increment_mark (Section *)
short	nrn_value_mark (Section *)
int	is_point_process (Object *)
int	nrn_vartype (Symbol *)
void	recalc_diam (void)
Prop *	nrn_mechanism_check (int type, Section *sec, int inode)
void	nrn_fast_imem_alloc ()
void	nrn_calc_fast_imem (NrnThread *)
Section *	nrn_secarg (int iarg)
void	nrn_seg_or_x_arg (int iarg, Section **psec, double *px)
void	nrn_seg_or_x_arg2 (int iarg, Section **psec, double *px)
Section *	nrnpy_pysecname2sec (const char *)
const char *	nrnpy_sec2pysecname (Section *sec)
void	nrnpy_pysecname2sec_add (Section *sec)
void	nrnpy_pysecname2sec_remove (Section *sec)
void	nrn_verify_ion_charge_defined ()
void	nrn_pt3dclear (Section *, int)
void	nrn_length_change (Section *, double)
void	stor_pt3d (Section *, double x, double y, double z, double d)

Variables
int	state_discon_allowed_
int	section_object_seen
int	nrn_use_fast_imem
int	nrn_netrec_state_adjust
int	nrn_sparse_partrans

Function Documentation

_nrn_free_fornetcon()

void _nrn_free_fornetcon

(

void **

)

Definition at line 4108 of file netcvode.cpp.

_nrn_free_watch()

void _nrn_free_watch	(	Datum *	,
		int	,
		int
	)

Called by Point_process destructor in translated mod file.

Definition at line 2550 of file netcvode.cpp.

_nrn_watch_activate()

void _nrn_watch_activate	(	Datum *	,
		double(*)(Point_process *)	,
		int	,
		Point_process *	,
		int	,
		double
	)

Definition at line 2431 of file netcvode.cpp.

_nrn_watch_allocate()

void _nrn_watch_allocate	(	Datum *	d,
		double(*)(Point_process *)	c,
		int	i,
		Point_process *	pnt,
		double	flag
	)

Introduced so corenrn->nrn can request the mod file to make sure all WatchCondition are allocated.

When that is the case then corenrn can call nrn_watch_activate with all args filled out because the allocated WatchCondition has double (*c)(Point_process) and flag_ filled in.

Definition at line 2515 of file netcvode.cpp.

activclamp_lhs()

void activclamp_lhs

(

void

)

Definition at line 180 of file clamp.cpp.

activclamp_rhs()

void activclamp_rhs

(

void

)

Definition at line 162 of file clamp.cpp.

activstim_rhs()

void activstim_rhs

(

void

)

Definition at line 159 of file fstim.cpp.

activsynapse_lhs()

void activsynapse_lhs

(

void

)

Definition at line 214 of file synapse.cpp.

activsynapse_rhs()

void activsynapse_rhs

(

void

)

Definition at line 204 of file synapse.cpp.

add_nrn_fornetcons()

void add_nrn_fornetcons	(	int	,
		int
	)

Definition at line 222 of file init.cpp.

arc0at0()

int arc0at0

(

Section *

)

Definition at line 387 of file cabcode.cpp.

cable_prop_assign()

void cable_prop_assign	(	Symbol *	sym,
		double *	pd,
		int	op
	)

Definition at line 1602 of file cabcode.cpp.

cable_prop_eval_pointer()

double* cable_prop_eval_pointer

(

Symbol *

)

Definition at line 1538 of file cabcode.cpp.

can_change_morph()

int can_change_morph

(

Section *

)

Definition at line 1245 of file treeset.cpp.

chk_access()

Section* chk_access

(

void

)

Definition at line 437 of file cabcode.cpp.

clamp_prepare()

void clamp_prepare

(

void

)

Definition at line 144 of file clamp.cpp.

clear_point_process_struct()

void clear_point_process_struct

(

Prop *

p

)

Definition at line 376 of file point.cpp.

dprop()

double* dprop	(	Symbol *	s,
		int	indx,
		Section *	sec,
		short	inode
	)

Definition at line 2073 of file cabcode.cpp.

ext_con_coef()

void ext_con_coef

(

void

)

Definition at line 507 of file extcelln.cpp.

extcell_2d_alloc()

void extcell_2d_alloc

(

Section *

sec

)

Definition at line 343 of file extcelln.cpp.

extcell_node_create()

void extcell_node_create

(

Node *

)

Definition at line 303 of file extcelln.cpp.

extnode_free_elements()

void extnode_free_elements

(

Extnode *

)

Definition at line 211 of file extcelln.cpp.

hoc_level_pushsec()

void hoc_level_pushsec

(

Section *

)

Definition at line 2375 of file cabcode.cpp.

hoc_reg_ba()

void hoc_reg_ba	(	int	,
		nrn_bamech_t	,
		int
	)

Definition at line 934 of file init.cpp.

hoc_register_dparam_semantics()

void hoc_register_dparam_semantics	(	int	,
		int	,
		const char *
	)

Definition at line 732 of file init.cpp.

hoc_register_dparam_size()

void hoc_register_dparam_size	(	int	,
		int
	)

hoc_register_limits()

void hoc_register_limits	(	int	,
		HocParmLimits *
	)

Definition at line 892 of file init.cpp.

hoc_register_tolerance()

void hoc_register_tolerance	(	int	,
		HocStateTolerance *	,
		Symbol ***
	)

Definition at line 969 of file init.cpp.

hoc_register_units()

void hoc_register_units	(	int	,
		HocParmUnits *
	)

Definition at line 913 of file init.cpp.

hoc_section_pathname()

char* hoc_section_pathname

(

Section *

)

Definition at line 1846 of file cabcode.cpp.

hoc_symbol_tolerance()

void hoc_symbol_tolerance	(	Symbol *	,
		double
	)

Definition at line 109 of file code2.cpp.

is_point_process()

int is_point_process

(

Object *

)

Definition at line 405 of file point.cpp.

long_difus_solve()

void long_difus_solve	(	int	method,
		NrnThread *	nt
	)

Definition at line 98 of file ldifus.cpp.

mech_insert1()

void mech_insert1	(	Section *	,
		int
	)

Definition at line 845 of file cabcode.cpp.

mech_uninsert1()

void mech_uninsert1	(	Section *	sec,
		Symbol *	s
	)

Definition at line 913 of file cabcode.cpp.

modl_reg()

void modl_reg

(

void

)

Needed for compilation.

Definition at line 393 of file inithoc.cpp.

new_sections()

void new_sections	(	Object *	ob,
		Symbol *	sym,
		hoc_Item **	pitm,
		int	size
	)

node_destruct()

void node_destruct	(	Node **	,
		int
	)

Definition at line 661 of file solve.cpp.

node_dist()

double node_dist	(	Section *	,
		Node *
	)

Definition at line 151 of file solve.cpp.

node_exact()

Node* node_exact	(	Section *	,
		double
	)

Definition at line 1956 of file cabcode.cpp.

node_index()

int node_index	(	Section *	sec,
		double	x
	)

Definition at line 1470 of file cabcode.cpp.

node_index_exact()

int node_index_exact	(	Section *	,
		double
	)

Definition at line 1496 of file cabcode.cpp.

node_ptr()

Node* node_ptr	(	Section *	sec,
		double	x,
		double *	parea
	)

Definition at line 2003 of file cabcode.cpp.

nrn_arc_position()

double nrn_arc_position	(	Section *	,
		Node *
	)

Definition at line 1880 of file cabcode.cpp.

nrn_area_ri()

void nrn_area_ri

(

Section *

sec

)

Definition at line 773 of file treeset.cpp.

nrn_at_beginning()

int nrn_at_beginning

(

Section *

sec

)

Definition at line 1656 of file cabcode.cpp.

nrn_ba()

void nrn_ba	(	NrnThread *	,
		int
	)

Definition at line 1041 of file fadvance.cpp.

nrn_cache_prop_realloc()

void nrn_cache_prop_realloc

(

)

Definition at line 572 of file cxprop.cpp.

nrn_cachevec()

void nrn_cachevec

(

int

)

Definition at line 2108 of file treeset.cpp.

nrn_calc_fast_imem()

void nrn_calc_fast_imem

(

NrnThread *

)

Definition at line 623 of file fadvance.cpp.

nrn_call_mech_func()

double nrn_call_mech_func	(	Symbol *	,
		int	narg,
		Prop *	,
		int	type
	)

Definition at line 1060 of file init.cpp.

nrn_cap_jacob()

void nrn_cap_jacob	(	NrnThread *	,
		Memb_list *
	)

Definition at line 32 of file capac.cpp.

nrn_clear_mark()

void nrn_clear_mark

(

void

)

Definition at line 450 of file solve.cpp.

nrn_connection_position()

double nrn_connection_position

(

Section *

)

Definition at line 1645 of file cabcode.cpp.

nrn_diam_change()

void nrn_diam_change

(

Section *

)

Definition at line 1201 of file treeset.cpp.

nrn_disconnect()

void nrn_disconnect

(

Section *

)

Definition at line 584 of file cabcode.cpp.

nrn_errno_check()

int nrn_errno_check

(

int

)

Definition at line 784 of file fadvance.cpp.

nrn_exists()

int nrn_exists	(	Symbol *	,
		Node *
	)

Definition at line 1317 of file cabcode.cpp.

nrn_fast_imem_alloc()

void nrn_fast_imem_alloc

(

)

Definition at line 614 of file multicore.cpp.

nrn_fihexec()

void nrn_fihexec

(

int

)

Definition at line 36 of file finithnd.cpp.

nrn_increment_mark()

short nrn_increment_mark

(

Section *

)

Definition at line 456 of file solve.cpp.

nrn_initcode()

void nrn_initcode

(

)

Definition at line 72 of file cabcode.cpp.

nrn_is_ion()

int nrn_is_ion

(

int

)

Definition at line 45 of file eion.cpp.

nrn_isecstack()

int nrn_isecstack

(

void

)

Definition at line 54 of file cabcode.cpp.

nrn_length_change()

void nrn_length_change	(	Section *	,
		double
	)

Definition at line 1220 of file treeset.cpp.

nrn_mechanism()

Prop* nrn_mechanism	(	int	type,
		Node *
	)

Definition at line 1079 of file cabcode.cpp.

nrn_mechanism_check()

Prop* nrn_mechanism_check	(	int	type,
		Section *	sec,
		int	inode
	)

Definition at line 1092 of file cabcode.cpp.

nrn_mk_prop_pools()

void nrn_mk_prop_pools

(

int

)

Definition at line 255 of file cxprop.cpp.

nrn_multisplit_ptr_update()

void nrn_multisplit_ptr_update

(

void

)

Definition at line 1594 of file multisplit.cpp.

nrn_node_destruct1()

void nrn_node_destruct1

(

Node *

)

Definition at line 629 of file solve.cpp.

nrn_parent_info()

void nrn_parent_info

(

Section *

s

)

Definition at line 1689 of file cabcode.cpp.

nrn_pointing()

int nrn_pointing

(

double *

)

Definition at line 880 of file init.cpp.

nrn_popsec()

void nrn_popsec

(

void

)

Definition at line 122 of file cabcode.cpp.

nrn_pt3dclear()

void nrn_pt3dclear	(	Section *	,
		int
	)

Definition at line 1103 of file treeset.cpp.

nrn_pushsec()

void nrn_pushsec

(

Section *

)

Definition at line 97 of file cabcode.cpp.

nrn_ra()

double nrn_ra

(

Section *

)

Definition at line 392 of file cabcode.cpp.

nrn_rangeconst()

void nrn_rangeconst	(	Section *	,
		Symbol *	,
		double *	value,
		int	op
	)

Definition at line 956 of file cabcode.cpp.

nrn_rangepointer()

double* nrn_rangepointer	(	Section *	,
		Symbol *	,
		double	x
	)

Definition at line 1334 of file cabcode.cpp.

nrn_recalc_ptrs()

void nrn_recalc_ptrs

(

double *(*)(double *)

r

)

Definition at line 2178 of file treeset.cpp.

nrn_recalc_ptrvector()

void nrn_recalc_ptrvector

(

void

)

Definition at line 98 of file cachevec.cpp.

nrn_relocate_old_points()

void nrn_relocate_old_points	(	Section *	oldsec,
		Node *	oldnode,
		Section *	sec,
		Node *	node
	)

Definition at line 162 of file point.cpp.

nrn_rhs_ext()

void nrn_rhs_ext

(

NrnThread *

)

Definition at line 360 of file extcelln.cpp.

nrn_sec2cell()

Object* nrn_sec2cell

(

Section *

)

Definition at line 224 of file cabcode.cpp.

nrn_sec2cell_equals()

int nrn_sec2cell_equals	(	Section *	,
		Object *
	)

Definition at line 239 of file cabcode.cpp.

nrn_sec2pysecname()

const char* nrn_sec2pysecname

(

Section *

)

Definition at line 1821 of file cabcode.cpp.

nrn_sec_pop()

Section* nrn_sec_pop

(

void

)

Definition at line 743 of file cabcode.cpp.

nrn_sec_ref()

void nrn_sec_ref	(	Section **	,
		Section *
	)

Definition at line 569 of file solve.cpp.

nrn_secarg()

Section* nrn_secarg

(

int

iarg

)

Definition at line 50 of file seclist.cpp.

nrn_secstack()

void nrn_secstack

(

int

)

Definition at line 58 of file cabcode.cpp.

nrn_section_orientation()

double nrn_section_orientation

(

Section *

)

Definition at line 1651 of file cabcode.cpp.

nrn_seg_or_x_arg()

void nrn_seg_or_x_arg	(	int	iarg,
		Section **	psec,
		double *	px
	)

Definition at line 191 of file point.cpp.

nrn_seg_or_x_arg2()

void nrn_seg_or_x_arg2	(	int	iarg,
		Section **	psec,
		double *	px
	)

Definition at line 207 of file point.cpp.

nrn_setup_ext()

void nrn_setup_ext

(

NrnThread *

)

Definition at line 438 of file extcelln.cpp.

nrn_trueparent()

Section* nrn_trueparent

(

Section *

)

Definition at line 1676 of file cabcode.cpp.

nrn_update_ps2nt()

void nrn_update_ps2nt

(

void

)

Definition at line 4850 of file netcvode.cpp.

nrn_use_daspk()

void nrn_use_daspk

(

int

)

Definition at line 309 of file netcvode.cpp.

nrn_value_mark()

short nrn_value_mark

(

Section *

)

Definition at line 457 of file solve.cpp.

nrn_vartype()

int nrn_vartype

(

Symbol *

)

Definition at line 488 of file eion.cpp.

nrn_verify_ion_charge_defined()

void nrn_verify_ion_charge_defined

(

)

Definition at line 232 of file eion.cpp.

nrn_vext_pd()

double* nrn_vext_pd	(	Symbol *	s,
		int	indx,
		Node *	nd
	)

Definition at line 2044 of file cabcode.cpp.

nrniv_recalc_ptrs()

void nrniv_recalc_ptrs

(

void

)

Definition at line 35 of file cachevec.cpp.

nrnpy_dprop()

double* nrnpy_dprop	(	Symbol *	s,
		int	indx,
		Section *	sec,
		short	inode,
		int *	err
	)

Definition at line 2105 of file cabcode.cpp.

nrnpy_pysecname2sec()

Section* nrnpy_pysecname2sec

(

const char *

)

Definition at line 40 of file pysecname2sec.cpp.

nrnpy_pysecname2sec_add()

void nrnpy_pysecname2sec_add

(

Section *

sec

)

Definition at line 151 of file pysecname2sec.cpp.

nrnpy_pysecname2sec_remove()

void nrnpy_pysecname2sec_remove

(

Section *

sec

)

Definition at line 172 of file pysecname2sec.cpp.

nrnpy_sec2pysecname()

const char* nrnpy_sec2pysecname

(

Section *

sec

)

ob_sec_access_push()

void ob_sec_access_push

(

hoc_Item *

)

oc_restore_cabcode()

void oc_restore_cabcode	(	int *	a1,
		int *	a2
	)

Definition at line 88 of file cabcode.cpp.

oc_save_cabcode()

void oc_save_cabcode	(	int *	a1,
		int *	a2
	)

Definition at line 82 of file cabcode.cpp.

prop_free()

void prop_free

(

Prop **

)

Definition at line 724 of file treeset.cpp.

recalc_diam()

void recalc_diam

(

void

)

Definition at line 940 of file treeset.cpp.

sec_and_position()

const char* sec_and_position	(	Section *	sec,
		Node *	nd
	)

Definition at line 1922 of file cabcode.cpp.

sec_free()

void sec_free

(

hoc_Item *

)

Definition at line 508 of file solve.cpp.

secname()

const char* secname

(

Section *

)

Definition at line 1787 of file cabcode.cpp.

second_order_cur()

void second_order_cur

(

NrnThread *

)

Definition at line 622 of file eion.cpp.

section_order()

void section_order

(

void

)

Definition at line 835 of file solve.cpp.

section_ref()

void section_ref

(

Section *

)

Definition at line 563 of file solve.cpp.

section_unref()

void section_unref

(

Section *

)

Definition at line 552 of file solve.cpp.

SectionList_reg()

void SectionList_reg

(

void

)

Definition at line 280 of file seclist.cpp.

SectionRef_reg()

void SectionRef_reg

(

void

)

Definition at line 365 of file secref.cpp.

segment_limits()

int segment_limits

(

double *

)

Definition at line 1934 of file cabcode.cpp.

setup_topology()

void setup_topology

(

void

)

Definition at line 1736 of file cabcode.cpp.

single_prop_free()

void single_prop_free

(

Prop *

)

Definition at line 736 of file treeset.cpp.

special_pnt_call()

int special_pnt_call	(	Object *	,
		Symbol *	,
		int
	)

Definition at line 96 of file hocmech.cpp.

stim_prepare()

void stim_prepare

(

void

)

Definition at line 151 of file fstim.cpp.

stor_pt3d()

void stor_pt3d	(	Section *	,
		double	x,
		double	y,
		double	z,
		double	d
	)

Definition at line 1352 of file treeset.cpp.

synapse_prepare()

void synapse_prepare

(

void

)

Definition at line 196 of file synapse.cpp.

topol_distance()

double topol_distance	(	Section *	,
		Node *	,
		Section *	,
		Node *	,
		Section **	,
		Node **
	)

Definition at line 166 of file solve.cpp.

v_setup_vectors()

void v_setup_vectors

(

void

)

Definition at line 1623 of file treeset.cpp.

Variable Documentation

nrn_netrec_state_adjust

int nrn_netrec_state_adjust

Definition at line 124 of file init.cpp.

nrn_sparse_partrans

int nrn_sparse_partrans

Definition at line 125 of file init.cpp.

nrn_use_fast_imem

int nrn_use_fast_imem

Definition at line 162 of file fadvance.cpp.

section_object_seen

int section_object_seen

state_discon_allowed_

int state_discon_allowed_

Definition at line 121 of file init.cpp.