#include <../../nrnconf.h>
#include <InterViews/resource.h>
#include "nrnmpi.h"
#include <math.h>
#include <stdlib.h>
#include "classreg.h"
#include "nrnoc2iv.h"
#include "datapath.h"
#include "cvodeobj.h"
#include "netcvode.h"
#include "membfunc.h"
#include "nrndaspk.h"
#include "tqueue.h"
#include "mymath.h"
#include "htlist.h"
#include <OS/list.h>
#include <nrnmutdec.h>
#include "cvodes/cvodes.h"
#include "cvodes/cvodes_impl.h"
#include "cvodes/cvdense.h"
#include "cvodes/cvdiag.h"
#include "shared/dense.h"
#include "ida/ida.h"
#include "nonvintblock.h"

Macros
#define	nt_dt nrn_threads->_dt

#define	nt_t nrn_threads->_t

#define	SUCCESS CV_SUCCESS

Functions
void	cvode_fadvance ()

void	cvode_finitialize ()

static void	static_mutex_for_at_time (bool b)

int	linmod_extra_eqn_count ()

int	nrn_modeltype ()

void	nrn_cachevec (int)

Point_process *	ob2pntproc (Object *)

static double	solve (void *v)

static double	statistics (void *v)

static double	spikestat (void *v)

static double	queue_mode (void *v)

void	nrn_extra_scatter_gather (int direction, int tid)

static double	re_init (void *v)

static double	rtol (void *v)

static double	nrn_atol (void *v)

Symbol *	hoc_get_last_pointer_symbol ()

void	hoc_symbol_tolerance (Symbol *, double)

static double	abstol (void *v)

static double	active (void *v)

static double	stiff (void *v)

static double	maxorder (void *v)

static double	order (void *v)

static double	minstep (void *v)

static double	maxstep (void *v)

static double	jacobian (void *v)

static double	states (void *v)

static double	dstates (void *v)

double	nrn_hoc2fun (void *v)

double	nrn_hoc2scatter_y (void *v)

double	nrn_hoc2gather_y (void *v)

double	nrn_hoc2fixed_step (void *v)

static double	error_weights (void *v)

static double	acor (void *v)

static double	statename (void *v)

static double	use_local_dt (void *v)

static double	use_daspk (void *v)

static double	dae_init_dteps (void *v)

static double	use_mxb (void *v)

static double	cache_efficient (void *v)

static double	use_long_double (void *v)

static double	condition_order (void *v)

static double	debug_event (void *v)

static double	n_record (void *v)

static double	n_remove (void *v)

static double	simgraph_remove (void *v)

static double	state_magnitudes (void *v)

static double	tstop_event (void *v)

static double	current_method (void *v)

static double	peq (void *v)

static double	event_queue_info (void *v)

static double	store_events (void *v)

static Object **	netconlist (void *v)

static double	ncs_netcons (void *v)

static double	use_parallel (void *v)

static double	nrn_structure_change_count (void *v)

static double	nrn_diam_change_count (void *v)

	declarePtrList (ExtraScatterList, Object) implementPtrList(ExtraScatterList

static double	extra_scatter_gather (void *v)

static double	extra_scatter_gather_remove (void *v)

static double	use_fast_imem (void *v)

static void *	cons (Object *)

static void	destruct (void *v)

void	Cvode_reg ()

static int	minit (CVodeMem cv_mem)

static int	msetup (CVodeMem cv_mem, int convfail, N_Vector ypred, N_Vector fpred, booleantype *jcurPtr, N_Vector vtemp, N_Vector vtemp2, N_Vector vtemp3)

static int	msolve (CVodeMem cv_mem, N_Vector b, N_Vector weight, N_Vector ycur, N_Vector fcur)

static int	msolve_lvardt (CVodeMem cv_mem, N_Vector b, N_Vector weight, N_Vector ycur, N_Vector fcur)

static void	mfree (CVodeMem cv_mem)

static void	f_gvardt (realtype t, N_Vector y, N_Vector ydot, void *f_data)

static void	f_lvardt (realtype t, N_Vector y, N_Vector ydot, void *f_data)

static void *	msetup_thread (NrnThread *)

static void *	msolve_thread (NrnThread *)

static void *	msolve_thread_part1 (NrnThread *)

static void *	msolve_thread_part2 (NrnThread *)

static void *	msolve_thread_part3 (NrnThread *)

static void *	f_thread (NrnThread *)

static void *	f_thread_transfer_part1 (NrnThread *)

static void *	f_thread_transfer_part2 (NrnThread *)

static void *	f_thread_ms_part1 (NrnThread *)

static void *	f_thread_ms_part2 (NrnThread *)

static void *	f_thread_ms_part3 (NrnThread *)

static void *	f_thread_ms_part4 (NrnThread *)

static void *	f_thread_ms_part34 (NrnThread *)

static void *	maxstate_thread (NrnThread *nt)

Variables
void(*	nrn_multisplit_setup_ )()

int	hoc_return_type_code

double	dt

double	t

int	diam_changed

int	secondorder

int	nrn_use_selfqueue_

int	use_cachevec

void(*	nrnthread_v_transfer_ )(NrnThread *)

void(*	nrnmpi_v_transfer_ )()

int	cvode_active_

NetCvode *	net_cvode_instance

short *	nrn_is_artificial_

int	structure_change_cnt

int	diam_change_cnt

bool	nrn_use_fifo_queue_

bool	nrn_use_bin_queue_

int(*	nrnpy_pysame )(Object , Object )

int(*	nrnpy_hoccommand_exec )(Object *)

static Object ExtraScatterList *	extra_scatterlist [2]

static Member_func	members []

static Member_ret_obj_func	omembers []

static CVRhsFn	pf_

static bool	maxstate_b

static Cvode *	maxstate_cv

static N_Vector	msolve_b_

static N_Vector	msolve_ycur_

static Cvode *	msolve_cv_

static realtype	f_t_

static N_Vector	f_y_

static N_Vector	f_ydot_

static Cvode *	f_cv_

Macro Definition Documentation

◆ nt_dt

#define nt_dt nrn_threads->_dt

Definition at line 59 of file cvodeobj.cpp.

◆ nt_t

#define nt_t nrn_threads->_t

Definition at line 60 of file cvodeobj.cpp.

◆ SUCCESS

#define SUCCESS CV_SUCCESS

Definition at line 95 of file cvodeobj.cpp.

Function Documentation

◆ abstol()

static double abstol ( void * v )

static

Definition at line 185 of file cvodeobj.cpp.

◆ acor()

static double acor ( void * v )

static

Definition at line 297 of file cvodeobj.cpp.

◆ active()

static double active ( void * v )

static

Definition at line 211 of file cvodeobj.cpp.

◆ cache_efficient()

static double cache_efficient ( void * v )

static

Definition at line 359 of file cvodeobj.cpp.

◆ condition_order()

static double condition_order ( void * v )

static

Definition at line 380 of file cvodeobj.cpp.

◆ cons()

static void* cons ( Object * )

static

Definition at line 646 of file cvodeobj.cpp.

◆ current_method()

static double current_method ( void * v )

static

Definition at line 458 of file cvodeobj.cpp.

◆ cvode_fadvance()

void cvode_fadvance ( )

◆ cvode_finitialize()

void cvode_finitialize ( )

◆ Cvode_reg()

void Cvode_reg ( )

Definition at line 668 of file cvodeobj.cpp.

◆ dae_init_dteps()

static double dae_init_dteps ( void * v )

static

Definition at line 336 of file cvodeobj.cpp.

◆ debug_event()

static double debug_event ( void * v )

static

Definition at line 390 of file cvodeobj.cpp.

◆ declarePtrList()

declarePtrList	(	ExtraScatterList	,
		Object
	)

◆ destruct()

static void destruct ( void * v )

static

Definition at line 661 of file cvodeobj.cpp.

◆ dstates()

static double dstates ( void * v )

static

Definition at line 280 of file cvodeobj.cpp.

◆ error_weights()

static double error_weights ( void * v )

static

Definition at line 291 of file cvodeobj.cpp.

◆ event_queue_info()

static double event_queue_info ( void * v )

static

Definition at line 480 of file cvodeobj.cpp.

◆ extra_scatter_gather()

static double extra_scatter_gather ( void * v )

static

Definition at line 549 of file cvodeobj.cpp.

◆ extra_scatter_gather_remove()

static double extra_scatter_gather_remove ( void * v )

static

Definition at line 563 of file cvodeobj.cpp.

◆ f_gvardt()

static void f_gvardt	(	realtype	t,
		N_Vector	y,
		N_Vector	ydot,
		void *	f_data
	)

static

Definition at line 1498 of file cvodeobj.cpp.

◆ f_lvardt()

static void f_lvardt	(	realtype	t,
		N_Vector	y,
		N_Vector	ydot,
		void *	f_data
	)

static

Definition at line 1533 of file cvodeobj.cpp.

◆ f_thread()

static void * f_thread ( NrnThread * nt )

static

Definition at line 1542 of file cvodeobj.cpp.

◆ f_thread_ms_part1()

static void * f_thread_ms_part1 ( NrnThread * nt )

static

Definition at line 1565 of file cvodeobj.cpp.

◆ f_thread_ms_part2()

static void * f_thread_ms_part2 ( NrnThread * nt )

static

Definition at line 1572 of file cvodeobj.cpp.

◆ f_thread_ms_part3()

static void * f_thread_ms_part3 ( NrnThread * nt )

static

Definition at line 1578 of file cvodeobj.cpp.

◆ f_thread_ms_part34()

static void * f_thread_ms_part34 ( NrnThread * nt )

static

Definition at line 1590 of file cvodeobj.cpp.

◆ f_thread_ms_part4()

static void * f_thread_ms_part4 ( NrnThread * nt )

static

Definition at line 1584 of file cvodeobj.cpp.

◆ f_thread_transfer_part1()

static void * f_thread_transfer_part1 ( NrnThread * nt )

static

Definition at line 1551 of file cvodeobj.cpp.

◆ f_thread_transfer_part2()

static void * f_thread_transfer_part2 ( NrnThread * nt )

static

Definition at line 1558 of file cvodeobj.cpp.

◆ hoc_get_last_pointer_symbol()

Symbol* hoc_get_last_pointer_symbol ( )

Definition at line 1761 of file code.cpp.

◆ hoc_symbol_tolerance()

void hoc_symbol_tolerance	(	Symbol *	,
		double
	)

Definition at line 109 of file code2.cpp.

◆ jacobian()

static double jacobian ( void * v )

static

Definition at line 265 of file cvodeobj.cpp.

◆ linmod_extra_eqn_count()

int linmod_extra_eqn_count ( )

◆ maxorder()

static double maxorder ( void * v )

static

Definition at line 230 of file cvodeobj.cpp.

◆ maxstate_thread()

static void* maxstate_thread ( NrnThread * nt )

static

Definition at line 931 of file cvodeobj.cpp.

◆ maxstep()

static double maxstep ( void * v )

static

Definition at line 257 of file cvodeobj.cpp.

◆ mfree()

static void mfree ( CVodeMem cv_mem )

static

Definition at line 1490 of file cvodeobj.cpp.

◆ minit()

static int minit ( CVodeMem cv_mem )

static

Definition at line 1410 of file cvodeobj.cpp.

◆ minstep()

static double minstep ( void * v )

static

Definition at line 249 of file cvodeobj.cpp.

◆ msetup()

static int msetup	(	CVodeMem	cv_mem,
		int	convfail,
		N_Vector	ypred,
		N_Vector	fpred,
		booleantype *	jcurPtr,
		N_Vector	vtemp,
		N_Vector	vtemp2,
		N_Vector	vtemp3
	)

static

Definition at line 1415 of file cvodeobj.cpp.

◆ msetup_thread()

static void* msetup_thread ( NrnThread * )

static

◆ msolve()

static int msolve	(	CVodeMem	cv_mem,
		N_Vector	b,
		N_Vector	weight,
		N_Vector	ycur,
		N_Vector	fcur
	)

static

Definition at line 1428 of file cvodeobj.cpp.

◆ msolve_lvardt()

static int msolve_lvardt	(	CVodeMem	cv_mem,
		N_Vector	b,
		N_Vector	weight,
		N_Vector	ycur,
		N_Vector	fcur
	)

static

Definition at line 1449 of file cvodeobj.cpp.

◆ msolve_thread()

static void * msolve_thread ( NrnThread * nt )

static

Definition at line 1460 of file cvodeobj.cpp.

◆ msolve_thread_part1()

static void * msolve_thread_part1 ( NrnThread * nt )

static

Definition at line 1469 of file cvodeobj.cpp.

◆ msolve_thread_part2()

static void * msolve_thread_part2 ( NrnThread * nt )

static

Definition at line 1476 of file cvodeobj.cpp.

◆ msolve_thread_part3()

static void * msolve_thread_part3 ( NrnThread * nt )

static

Definition at line 1482 of file cvodeobj.cpp.

◆ n_record()

static double n_record ( void * v )

static

Definition at line 400 of file cvodeobj.cpp.

◆ n_remove()

static double n_remove ( void * v )

static

Definition at line 406 of file cvodeobj.cpp.

◆ ncs_netcons()

static double ncs_netcons ( void * v )

static

Definition at line 497 of file cvodeobj.cpp.

◆ netconlist()

static Object** netconlist ( void * v )

static

Definition at line 492 of file cvodeobj.cpp.

◆ nrn_atol()

static double nrn_atol ( void * v )

static

Definition at line 174 of file cvodeobj.cpp.

◆ nrn_cachevec()

void nrn_cachevec ( int )

Definition at line 2108 of file treeset.cpp.

◆ nrn_diam_change_count()

static double nrn_diam_change_count ( void * v )

static

Definition at line 524 of file cvodeobj.cpp.

◆ nrn_extra_scatter_gather()

void nrn_extra_scatter_gather	(	int	direction,
		int	tid
	)

Definition at line 536 of file cvodeobj.cpp.

◆ nrn_hoc2fixed_step()

double nrn_hoc2fixed_step ( void * v )

Definition at line 4230 of file netcvode.cpp.

◆ nrn_hoc2fun()

double nrn_hoc2fun ( void * v )

Definition at line 4235 of file netcvode.cpp.

◆ nrn_hoc2gather_y()

double nrn_hoc2gather_y ( void * v )

Definition at line 4258 of file netcvode.cpp.

◆ nrn_hoc2scatter_y()

double nrn_hoc2scatter_y ( void * v )

Definition at line 4248 of file netcvode.cpp.

◆ nrn_modeltype()

int nrn_modeltype ( )

Definition at line 1934 of file treeset.cpp.

◆ nrn_structure_change_count()

static double nrn_structure_change_count ( void * v )

static

Definition at line 519 of file cvodeobj.cpp.

◆ ob2pntproc()

Point_process* ob2pntproc ( Object * )

Definition at line 88 of file hocmech.cpp.

◆ order()

static double order ( void * v )

static

Definition at line 238 of file cvodeobj.cpp.

◆ peq()

static double peq ( void * v )

static

Definition at line 474 of file cvodeobj.cpp.

◆ queue_mode()

static double queue_mode ( void * v )

static

Definition at line 129 of file cvodeobj.cpp.

◆ re_init()

static double re_init ( void * v )

static

Definition at line 158 of file cvodeobj.cpp.

◆ rtol()

static double rtol ( void * v )

static

Definition at line 167 of file cvodeobj.cpp.

◆ simgraph_remove()

static double simgraph_remove ( void * v )

static

Definition at line 412 of file cvodeobj.cpp.

◆ solve()

static double solve ( void * v )

static

Definition at line 99 of file cvodeobj.cpp.

◆ spikestat()

static double spikestat ( void * v )

static

Definition at line 124 of file cvodeobj.cpp.

◆ state_magnitudes()

static double state_magnitudes ( void * v )

static

Definition at line 418 of file cvodeobj.cpp.

◆ statename()

static double statename ( void * v )

static

Definition at line 303 of file cvodeobj.cpp.

◆ states()

static double states ( void * v )

static

Definition at line 274 of file cvodeobj.cpp.

◆ static_mutex_for_at_time()

static void static_mutex_for_at_time ( bool b )

static

Definition at line 35 of file cvodeobj.cpp.

◆ statistics()

static double statistics ( void * v )

static

Definition at line 115 of file cvodeobj.cpp.

◆ stiff()

static double stiff ( void * v )

static

Definition at line 222 of file cvodeobj.cpp.

◆ store_events()

static double store_events ( void * v )

static

Definition at line 486 of file cvodeobj.cpp.

◆ tstop_event()

static double tstop_event ( void * v )

static

Definition at line 423 of file cvodeobj.cpp.

◆ use_daspk()

static double use_daspk ( void * v )

static

Definition at line 324 of file cvodeobj.cpp.

◆ use_fast_imem()

static double use_fast_imem ( void * v )

static

Definition at line 579 of file cvodeobj.cpp.

◆ use_local_dt()

static double use_local_dt ( void * v )

static

Definition at line 314 of file cvodeobj.cpp.

◆ use_long_double()

static double use_long_double ( void * v )

static

Definition at line 369 of file cvodeobj.cpp.

◆ use_mxb()

static double use_mxb ( void * v )

static

Definition at line 346 of file cvodeobj.cpp.

◆ use_parallel()

static double use_parallel ( void * v )

static

Definition at line 506 of file cvodeobj.cpp.

Variable Documentation

◆ cvode_active_

int cvode_active_

Definition at line 158 of file fadvance.cpp.

◆ diam_change_cnt

int diam_change_cnt

Definition at line 76 of file cvodeobj.cpp.

◆ diam_changed

int diam_changed

Definition at line 23 of file cabcode.cpp.

◆ dt

double dt

Definition at line 123 of file init.cpp.

◆ extra_scatterlist

Object ExtraScatterList* extra_scatterlist[2]

static

Definition at line 534 of file cvodeobj.cpp.

◆ f_cv_

Cvode* f_cv_

static

Definition at line 1497 of file cvodeobj.cpp.

◆ f_t_

realtype f_t_

static

Definition at line 1494 of file cvodeobj.cpp.

◆ f_y_

N_Vector f_y_

static

Definition at line 1495 of file cvodeobj.cpp.

◆ f_ydot_

N_Vector f_ydot_

static

Definition at line 1496 of file cvodeobj.cpp.

◆ hoc_return_type_code

int hoc_return_type_code

Definition at line 41 of file code.cpp.

◆ maxstate_b

bool maxstate_b

static

Definition at line 929 of file cvodeobj.cpp.

◆ maxstate_cv

Cvode* maxstate_cv

static

Definition at line 930 of file cvodeobj.cpp.

◆ members

Member_func members[]

static

Definition at line 589 of file cvodeobj.cpp.

◆ msolve_b_

N_Vector msolve_b_

static

Definition at line 1425 of file cvodeobj.cpp.

◆ msolve_cv_

Cvode* msolve_cv_

static

Definition at line 1427 of file cvodeobj.cpp.

◆ msolve_ycur_

N_Vector msolve_ycur_

static

Definition at line 1426 of file cvodeobj.cpp.

◆ net_cvode_instance

NetCvode* net_cvode_instance

Definition at line 27 of file cvodestb.cpp.

◆ nrn_is_artificial_

short * nrn_is_artificial_

Definition at line 18 of file cell_group.cpp.

◆ nrn_multisplit_setup_

void(* nrn_multisplit_setup_) ()

Definition at line 46 of file treeset.cpp.

◆ nrn_use_bin_queue_

bool nrn_use_bin_queue_

Definition at line 251 of file netcvode.cpp.

◆ nrn_use_fifo_queue_

bool nrn_use_fifo_queue_

Definition at line 248 of file netcvode.cpp.

◆ nrn_use_selfqueue_

int nrn_use_selfqueue_

Definition at line 92 of file netcvode.cpp.

◆ nrnmpi_v_transfer_

void(* nrnmpi_v_transfer_) ()

Definition at line 147 of file fadvance.cpp.

◆ nrnpy_hoccommand_exec

int(* nrnpy_hoccommand_exec) (Object *)

Definition at line 17 of file objcmd.cpp.

◆ nrnpy_pysame

int(* nrnpy_pysame) (Object *, Object *)

Definition at line 529 of file cvodeobj.cpp.

◆ nrnthread_v_transfer_

void(* nrnthread_v_transfer_) (NrnThread *)

Definition at line 148 of file fadvance.cpp.

◆ omembers

Member_ret_obj_func omembers[]

static

Initial value:

= {
    "netconlist", netconlist,
    0, 0
}

Definition at line 641 of file cvodeobj.cpp.

◆ pf_

CVRhsFn pf_

static

Definition at line 687 of file cvodeobj.cpp.

◆ secondorder

int secondorder

Definition at line 120 of file init.cpp.

◆ structure_change_cnt

int structure_change_cnt

Definition at line 75 of file cvodeobj.cpp.

◆ t

double t

Definition at line 123 of file init.cpp.

◆ use_cachevec

int use_cachevec

Definition at line 61 of file treeset.cpp.

Macros

Functions

Variables

Macro Definition Documentation

◆ nt_dt

◆ nt_t

◆ SUCCESS

Function Documentation

◆ abstol()

◆ acor()

◆ active()

◆ cache_efficient()

◆ condition_order()

◆ cons()

◆ current_method()

◆ cvode_fadvance()

◆ cvode_finitialize()

◆ Cvode_reg()

◆ dae_init_dteps()

◆ debug_event()

◆ declarePtrList()

◆ destruct()

◆ dstates()

◆ error_weights()

◆ event_queue_info()

◆ extra_scatter_gather()

◆ extra_scatter_gather_remove()

◆ f_gvardt()

◆ f_lvardt()

◆ f_thread()

◆ f_thread_ms_part1()

◆ f_thread_ms_part2()

◆ f_thread_ms_part3()

◆ f_thread_ms_part34()

◆ f_thread_ms_part4()

◆ f_thread_transfer_part1()

◆ f_thread_transfer_part2()

◆ hoc_get_last_pointer_symbol()

◆ hoc_symbol_tolerance()

◆ jacobian()

◆ linmod_extra_eqn_count()

◆ maxorder()

◆ maxstate_thread()

◆ maxstep()

◆ mfree()

◆ minit()

◆ minstep()

◆ msetup()

◆ msetup_thread()

◆ msolve()

◆ msolve_lvardt()

◆ msolve_thread()

◆ msolve_thread_part1()

◆ msolve_thread_part2()

◆ msolve_thread_part3()

◆ n_record()

◆ n_remove()

◆ ncs_netcons()

◆ netconlist()

◆ nrn_atol()

◆ nrn_cachevec()

◆ nrn_diam_change_count()

◆ nrn_extra_scatter_gather()

◆ nrn_hoc2fixed_step()

◆ nrn_hoc2fun()

◆ nrn_hoc2gather_y()

◆ nrn_hoc2scatter_y()

◆ nrn_modeltype()

◆ nrn_structure_change_count()

◆ ob2pntproc()

◆ order()

◆ peq()

◆ queue_mode()

◆ re_init()

◆ rtol()

◆ simgraph_remove()

◆ solve()

◆ spikestat()

◆ state_magnitudes()

◆ statename()