bbsavestate.cpp File Reference

#include <../../nrnconf.h>
#include "bbsavestate.h"
#include "classreg.h"
#include "ndatclas.h"
#include "nrnoc2iv.h"
#include "ocfile.h"
#include <cmath>
#include <nrnmpiuse.h>
#include <stdio.h>
#include <stdlib.h>
#include <string>
#include <sys/stat.h>
#include <unordered_map>
#include <unordered_set>
#include "netcon.h"
#include "nrniv_mf.h"
#include "tqueue.h"
#include "vrecitem.h"
#include "membfunc.h"
#include <ivocvect.h>

Go to the source code of this file.

Classes
class	BBSS_Cnt
class	BBSS_TxtFileOut
class	BBSS_TxtFileIn
class	BBSS_BufferOut
class	BBSS_BufferIn
struct	StateStructInfo
struct	DEList
class	SEWrap

Macros
#define	QUEUECHECK   1
#define	DEBUG   0
#define	PDEBUG   f->s(dbuf, 1)

Typedefs
typedef void(*	ReceiveFunc) (Point_process *, double *, double)
typedef void(*	PFIO) (int, Object *)
typedef std::vector< TQItem * >	TQItemList
typedef std::unordered_map< Point_process *, int >	PointProcessMap
typedef struct DEList	DEList
typedef std::unordered_map< Point_process *, DEList * >	PP2DE
typedef std::vector< double >	DblList
typedef std::unordered_map< NetCon *, DblList * >	NetCon2DblList
typedef std::vector< SEWrap * >	SEWrapList
typedef std::unordered_map< int, int >	Int2Int
typedef std::unordered_map< int, DblList * >	Int2DblList
typedef std::unordered_map< std::string, Section * >	SecName2Sec

Functions
static void	bbss_early (double td, TQItem *tq)
void	nrn_shape_update ()
Section *	nrn_section_exists (char *name, int index, Object *cell)
TQueue *	net_cvode_instance_event_queue (NrnThread *)
void	clear_event_queue ()
hoc_Item *	net_cvode_instance_psl ()
PlayRecList *	net_cvode_instance_prl ()
void	nrn_netcon_event (NetCon *, double)
void	nrn_gidout_iter (PFIO)
void	net_send (void **, double *, Point_process *, double, double)
void	nrn_fake_fire (int gid, double firetime, int fake_out)
Object *	nrn_gid2obj (int gid)
PreSyn *	nrn_gid2presyn (int gid)
int	nrn_gid_exists (int gid)
static void	nrn_spike_exchange (NrnThread *)
static void	nrnmpi_barrier ()
static void	nrnmpi_int_alltoallv (int *s, int *scnt, int *sdispl, int *r, int *rcnt, int *rdispl)
static void	nrnmpi_dbl_alltoallv (double *s, int *scnt, int *sdispl, double *r, int *rcnt, int *rdispl)
static int	nrnmpi_int_allmax (int x)
static void	nrnmpi_int_allgather (int *s, int *r, int n)
static void	nrnmpi_int_allgatherv (int *s, int *r, int *n, int *dspl)
static void	nrnmpi_dbl_allgatherv (double *s, double *r, int *n, int *dspl)
Point_process *	ob2pntproc (Object *)
void	nrn_play_init ()
static void	tqcallback (const TQItem *tq, int i)
static void	bbss_queuecheck ()
void *	bbss_buffer_counts (int *len, int **gids, int **sizes, int *global_size)
void	bbss_save_global (void *bbss, char *buffer, int sz)
void	bbss_restore_global (void *bbss, char *buffer, int sz)
void	bbss_save (void *bbss, int gid, char *buffer, int sz)
void	bbss_restore (void *bbss, int gid, int npiece, char *buffer, int sz)
void	bbss_save_done (void *bbss)
void	bbss_restore_done (void *bbss)
static void *	cons (Object *)
static void	destruct (void *v)
static double	save (void *v)
static void	bbss_restore_begin ()
static double	restore (void *v)
static double	save_request (void *v)
static double	save_gid (void *v)
static double	restore_gid (void *v)
static void	pycell_name2sec_maps_clear ()
static double	save_test (void *v)
static double	save_test_bin (void *v)
static double	ppignore (void *v)
static int	ignored (Prop *p)
static void	bbss_remove_delivered ()
static double	restore_test (void *v)
static double	restore_test_bin (void *v)
static double	vector_play_init (void *v)
void	BBSaveState_reg ()
static void	ssi_def ()
static double	binq_time (double tt)
static void	del_presyn_info ()
static void	base2spgid_item (int spgid, Object *obj)
static void	cb_gidobj (int gid, Object *obj)
static void	pycell_name2sec_maps_fill ()
static SecName2Sec &	pycell_name2sec_map (Object *c)
static void	all2allv_helper (int *scnt, int *sdispl, int *rcnt, int *rdispl)
static void	all2allv_int2 (int *scnt, int *sdispl, int *gidsrc, int *ndsrc)
static void	all2allv_dbl1 (int *scnt, int *sdispl, double *tssrc)
static void	scatteritems ()
static void	allgatherv_helper (int cnt, int *rcnt, int *rdspl)
static void	spikes_on_correct_host (int cnt, int *g, int *dcnts, int tscnt, double *ts, Int2DblList *m)
static void	construct_presyn_queue ()

Variables
bool	nrn_use_bin_queue_
void(*	nrn_binq_enqueue_error_handler )(double, TQItem *)
int	section_count
Section **	secorder
ReceiveFunc *	pnt_receive
NetCvode *	net_cvode_instance
cTemplate **	nrn_pnt_template_
double	t
short *	nrn_is_artificial_
Symlist *	hoc_built_in_symlist
static bool	use_spikecompress_
static bool	use_gidcompress_
static int	callback_mode
static TQItemList *	tq_presyn_fanout
static TQItemList *	tq_removal_list
static int	debug = DEBUG
static char	dbuf [1024]
static BBSaveState *	bbss
static int	usebin_
static std::unique_ptr< PointProcessMap >	pp_ignore_map
static Member_func	members []
static StateStructInfo *	ssi
static cTemplate *	nct
static std::unique_ptr< PP2DE >	pp2de
static std::unique_ptr< NetCon2DblList >	nc2dblist
static SEWrapList *	sewrap_list
static std::unique_ptr< Int2Int >	base2spgid {new Int2Int()}
static std::unique_ptr< Int2DblList >	src2send {new Int2DblList()}
static int	src2send_cnt
static std::unique_ptr< Int2DblList >	queuecheck_gid2unc
static std::unique_ptr< Int2DblList >	presyn_queue
static std::unordered_map< void *, SecName2Sec >	pycell_name2sec_maps
static int	giddest_size
static int *	giddest
static int *	tsdest_cnts
static double *	tsdest

Macro Definition Documentation

DEBUG

#define DEBUG   0

Definition at line 363 of file bbsavestate.cpp.

PDEBUG

#define PDEBUG   f->s(dbuf, 1)

Definition at line 369 of file bbsavestate.cpp.

QUEUECHECK

#define QUEUECHECK   1

Definition at line 295 of file bbsavestate.cpp.

Typedef Documentation

DblList

typedef std::vector<double> DblList

Definition at line 1120 of file bbsavestate.cpp.

DEList

typedef struct DEList DEList

Int2DblList

typedef std::unordered_map<int, DblList*> Int2DblList

Definition at line 1166 of file bbsavestate.cpp.

Int2Int

typedef std::unordered_map<int, int> Int2Int

Definition at line 1162 of file bbsavestate.cpp.

NetCon2DblList

typedef std::unordered_map<NetCon*, DblList*> NetCon2DblList

Definition at line 1121 of file bbsavestate.cpp.

PFIO

typedef void(* PFIO) (int, Object *)

Definition at line 214 of file bbsavestate.cpp.

PointProcessMap

typedef std::unordered_map<Point_process*, int> PointProcessMap

Definition at line 763 of file bbsavestate.cpp.

PP2DE

typedef std::unordered_map<Point_process*, DEList*> PP2DE

Definition at line 1117 of file bbsavestate.cpp.

ReceiveFunc

typedef void(* ReceiveFunc) (Point_process *, double *, double)

Definition at line 198 of file bbsavestate.cpp.

SecName2Sec

typedef std::unordered_map<std::string, Section*> SecName2Sec

Definition at line 1742 of file bbsavestate.cpp.

SEWrapList

typedef std::vector<SEWrap*> SEWrapList

Definition at line 1159 of file bbsavestate.cpp.

TQItemList

typedef std::vector<TQItem*> TQItemList

Definition at line 291 of file bbsavestate.cpp.

Function Documentation

all2allv_dbl1()

static void all2allv_dbl1 ( int *  scnt, int *  sdispl, double *  tssrc  )

static

Definition at line 2330 of file bbsavestate.cpp.

all2allv_helper()

static void all2allv_helper ( int *  scnt, int *  sdispl, int *  rcnt, int *  rdispl  )

static

Definition at line 2289 of file bbsavestate.cpp.

all2allv_int2()

static void all2allv_int2 ( int *  scnt, int *  sdispl, int *  gidsrc, int *  ndsrc  )

static

Definition at line 2306 of file bbsavestate.cpp.

allgatherv_helper()

static void allgatherv_helper ( int  cnt, int *  rcnt, int *  rdspl  )

static

Definition at line 2445 of file bbsavestate.cpp.

base2spgid_item()

static void base2spgid_item ( int  spgid, Object *  obj  )

static

Definition at line 1542 of file bbsavestate.cpp.

BBSaveState_reg()

void BBSaveState_reg

(

)

Definition at line 1034 of file bbsavestate.cpp.

bbss_buffer_counts()

void * bbss_buffer_counts	(	int *	len,
		int **	gids,
		int **	sizes,
		int *	global_size
	)

Definition at line 790 of file bbsavestate.cpp.

bbss_early()

static void bbss_early ( double  td, TQItem *  tq  )

static

Definition at line 1213 of file bbsavestate.cpp.

bbss_queuecheck()

static void bbss_queuecheck ( )

static

Definition at line 2776 of file bbsavestate.cpp.

bbss_remove_delivered()

static void bbss_remove_delivered ( )

static

Definition at line 843 of file bbsavestate.cpp.

bbss_restore()

void bbss_restore	(	void *	bbss,
		int	gid,
		int	npiece,
		char *	buffer,
		int	sz
	)

Definition at line 827 of file bbsavestate.cpp.

bbss_restore_begin()

static void bbss_restore_begin ( )

static

Definition at line 623 of file bbsavestate.cpp.

bbss_restore_done()

void bbss_restore_done

(

void *

bbss

)

Definition at line 876 of file bbsavestate.cpp.

bbss_restore_global()

void bbss_restore_global	(	void *	bbss,
		char *	buffer,
		int	sz
	)

Definition at line 810 of file bbsavestate.cpp.

bbss_save()

void bbss_save	(	void *	bbss,
		int	gid,
		char *	buffer,
		int	sz
	)

Definition at line 819 of file bbsavestate.cpp.

bbss_save_done()

void bbss_save_done

(

void *

bbss

)

Definition at line 838 of file bbsavestate.cpp.

bbss_save_global()

void bbss_save_global	(	void *	bbss,
		char *	buffer,
		int	sz
	)

Definition at line 803 of file bbsavestate.cpp.

binq_time()

static double binq_time ( double  tt )

static

Definition at line 1199 of file bbsavestate.cpp.

cb_gidobj()

static void cb_gidobj ( int  gid, Object *  obj  )

static

Definition at line 1658 of file bbsavestate.cpp.

clear_event_queue()

void clear_event_queue

(

)

Definition at line 57 of file cvodestb.cpp.

cons()

static void* cons ( Object *  )

static

Definition at line 603 of file bbsavestate.cpp.

construct_presyn_queue()

static void construct_presyn_queue ( )

static

Definition at line 2510 of file bbsavestate.cpp.

del_presyn_info()

static void del_presyn_info ( )

static

Definition at line 1450 of file bbsavestate.cpp.

destruct()

static void destruct ( void *  v )

static

Definition at line 608 of file bbsavestate.cpp.

ignored()

static int ignored ( Prop *  p )

static

Definition at line 780 of file bbsavestate.cpp.

net_cvode_instance_event_queue()

TQueue* net_cvode_instance_event_queue

(

NrnThread *

)

Definition at line 297 of file netcvode.cpp.

net_cvode_instance_prl()

PlayRecList* net_cvode_instance_prl

(

)

Definition at line 305 of file netcvode.cpp.

net_cvode_instance_psl()

hoc_Item* net_cvode_instance_psl

(

)

Definition at line 301 of file netcvode.cpp.

net_send()

void net_send	(	void **	,
		double *	,
		Point_process *	,
		double	,
		double
	)

Definition at line 2340 of file netcvode.cpp.

nrn_fake_fire()

void nrn_fake_fire	(	int	gid,
		double	firetime,
		int	fake_out
	)

Definition at line 867 of file netpar.cpp.

nrn_gid2obj()

Object * nrn_gid2obj

(

int

gid

)

Definition at line 1495 of file netpar.cpp.

nrn_gid2presyn()

PreSyn * nrn_gid2presyn

(

int

gid

)

Definition at line 1499 of file netpar.cpp.

nrn_gid_exists()

int nrn_gid_exists

(

int

gid

)

Definition at line 997 of file netpar.cpp.

nrn_gidout_iter()

void nrn_gidout_iter

(

PFIO

callback

)

Definition at line 1505 of file netpar.cpp.

nrn_netcon_event()

void nrn_netcon_event	(	NetCon *	,
		double
	)

Definition at line 162 of file netcvode.cpp.

nrn_play_init()

void nrn_play_init

(

)

Definition at line 75 of file cvodestb.cpp.

nrn_section_exists()

Section* nrn_section_exists	(	char *	name,
		int	index,
		Object *	cell
	)

Definition at line 2409 of file cabcode.cpp.

nrn_shape_update()

void nrn_shape_update

(

)

Definition at line 932 of file treeset.cpp.

nrn_spike_exchange()

static void nrn_spike_exchange ( NrnThread *  )

static

Definition at line 235 of file bbsavestate.cpp.

nrnmpi_barrier()

static void nrnmpi_barrier ( )

static

Definition at line 236 of file bbsavestate.cpp.

nrnmpi_dbl_allgatherv()

static void nrnmpi_dbl_allgatherv ( double *  s, double *  r, int *  n, int *  dspl  )

static

Definition at line 265 of file bbsavestate.cpp.

nrnmpi_dbl_alltoallv()

static void nrnmpi_dbl_alltoallv ( double *  s, int *  scnt, int *  sdispl, double *  r, int *  rcnt, int *  rdispl  )

static

Definition at line 242 of file bbsavestate.cpp.

nrnmpi_int_allgather()

static void nrnmpi_int_allgather ( int *  s, int *  r, int  n  )

static

Definition at line 255 of file bbsavestate.cpp.

nrnmpi_int_allgatherv()

static void nrnmpi_int_allgatherv ( int *  s, int *  r, int *  n, int *  dspl  )

static

Definition at line 260 of file bbsavestate.cpp.

nrnmpi_int_allmax()

static int nrnmpi_int_allmax ( int  x )

static

Definition at line 252 of file bbsavestate.cpp.

nrnmpi_int_alltoallv()

static void nrnmpi_int_alltoallv ( int *  s, int *  scnt, int *  sdispl, int *  r, int *  rcnt, int *  rdispl  )

static

Definition at line 237 of file bbsavestate.cpp.

ob2pntproc()

Point_process* ob2pntproc

(

Object *

)

Definition at line 88 of file hocmech.cpp.

ppignore()

static double ppignore ( void *  v )

static

Definition at line 766 of file bbsavestate.cpp.

pycell_name2sec_map()

static SecName2Sec& pycell_name2sec_map ( Object *  c )

static

Definition at line 1783 of file bbsavestate.cpp.

pycell_name2sec_maps_clear()

static void pycell_name2sec_maps_clear ( )

static

Definition at line 1746 of file bbsavestate.cpp.

pycell_name2sec_maps_fill()

static void pycell_name2sec_maps_fill ( )

static

Definition at line 1750 of file bbsavestate.cpp.

restore()

static double restore ( void *  v )

static

Definition at line 642 of file bbsavestate.cpp.

restore_gid()

static double restore_gid ( void *  v )

static

Definition at line 681 of file bbsavestate.cpp.

restore_test()

static double restore_test ( void *  v )

static

Definition at line 918 of file bbsavestate.cpp.

restore_test_bin()

static double restore_test_bin ( void *  v )

static

Definition at line 950 of file bbsavestate.cpp.

save()

static double save ( void *  v )

static

Definition at line 613 of file bbsavestate.cpp.

save_gid()

static double save_gid ( void *  v )

static

Definition at line 676 of file bbsavestate.cpp.

save_request()

static double save_request ( void *  v )

static

Definition at line 657 of file bbsavestate.cpp.

save_test()

static double save_test ( void *  v )

static

Definition at line 688 of file bbsavestate.cpp.

save_test_bin()

static double save_test_bin ( void *  v )

static

Definition at line 720 of file bbsavestate.cpp.

scatteritems()

static void scatteritems ( )

static

Definition at line 2352 of file bbsavestate.cpp.

spikes_on_correct_host()

static void spikes_on_correct_host ( int  cnt, int *  g, int *  dcnts, int  tscnt, double *  ts, Int2DblList *  m  )

static

Definition at line 2453 of file bbsavestate.cpp.

ssi_def()

static void ssi_def ( )

static

Definition at line 1046 of file bbsavestate.cpp.

tqcallback()

static void tqcallback ( const TQItem *  tq, int  i  )

static

Definition at line 1226 of file bbsavestate.cpp.

vector_play_init()

static double vector_play_init ( void *  v )

static

Definition at line 1010 of file bbsavestate.cpp.

Variable Documentation

base2spgid

std::unique_ptr<Int2Int> base2spgid {new Int2Int()}

static

Definition at line 1163 of file bbsavestate.cpp.

bbss

BBSaveState* bbss

static

Definition at line 372 of file bbsavestate.cpp.

callback_mode

int callback_mode

static

Definition at line 289 of file bbsavestate.cpp.

dbuf

char dbuf[1024]

static

Definition at line 365 of file bbsavestate.cpp.

debug

int debug = DEBUG

static

Definition at line 364 of file bbsavestate.cpp.

giddest

int* giddest

static

Definition at line 2284 of file bbsavestate.cpp.

giddest_size

int giddest_size

static

Definition at line 2283 of file bbsavestate.cpp.

hoc_built_in_symlist

Symlist* hoc_built_in_symlist

Definition at line 39 of file symbol.cpp.

members

Member_func members[]

static

Initial value:

= {
    
    {"save", save},
    {"restore", restore},
    {"save_test", save_test},
    {"restore_test", restore_test},
    
    {"save_test_bin", save_test_bin},
    {"restore_test_bin", restore_test_bin},
    
    {"save_request", save_request},
    {"save_gid", save_gid},
    {"restore_gid", restore_gid},
    
    {"ignore", ppignore},
    
    {"vector_play_init", vector_play_init},
    {0, 0}}

Definition at line 1015 of file bbsavestate.cpp.

nc2dblist

std::unique_ptr<NetCon2DblList> nc2dblist

static

Definition at line 1122 of file bbsavestate.cpp.

nct

cTemplate* nct

static

Definition at line 1045 of file bbsavestate.cpp.

net_cvode_instance

NetCvode* net_cvode_instance

Definition at line 27 of file cvodestb.cpp.

nrn_binq_enqueue_error_handler

void(* nrn_binq_enqueue_error_handler) (double, TQItem *)

Definition at line 28 of file sptbinq.cpp.

nrn_is_artificial_

short* nrn_is_artificial_

Definition at line 231 of file init.cpp.

nrn_pnt_template_

cTemplate** nrn_pnt_template_

Definition at line 169 of file init.cpp.

nrn_use_bin_queue_

bool nrn_use_bin_queue_

Definition at line 251 of file netcvode.cpp.

pnt_receive

ReceiveFunc* pnt_receive

Definition at line 171 of file init.cpp.

pp2de

std::unique_ptr<PP2DE> pp2de

static

Definition at line 1118 of file bbsavestate.cpp.

pp_ignore_map

std::unique_ptr<PointProcessMap> pp_ignore_map

static

Definition at line 764 of file bbsavestate.cpp.

presyn_queue

std::unique_ptr<Int2DblList> presyn_queue

static

Definition at line 1448 of file bbsavestate.cpp.

pycell_name2sec_maps

std::unordered_map<void*, SecName2Sec> pycell_name2sec_maps

static

Definition at line 1743 of file bbsavestate.cpp.

queuecheck_gid2unc

std::unique_ptr<Int2DblList> queuecheck_gid2unc

static

Definition at line 1196 of file bbsavestate.cpp.

secorder

Section** secorder

Definition at line 77 of file solve.cpp.

section_count

int section_count

Definition at line 76 of file solve.cpp.

sewrap_list

SEWrapList* sewrap_list

static

Definition at line 1160 of file bbsavestate.cpp.

src2send

std::unique_ptr<Int2DblList> src2send {new Int2DblList()}

static

Definition at line 1167 of file bbsavestate.cpp.

src2send_cnt

int src2send_cnt

static

Definition at line 1167 of file bbsavestate.cpp.

ssi

StateStructInfo* ssi

static

Definition at line 1044 of file bbsavestate.cpp.

t

double t

Definition at line 123 of file init.cpp.

tq_presyn_fanout

TQItemList* tq_presyn_fanout

static

Definition at line 292 of file bbsavestate.cpp.

tq_removal_list

TQItemList* tq_removal_list

static

Definition at line 293 of file bbsavestate.cpp.

tsdest

double* tsdest

static

Definition at line 2286 of file bbsavestate.cpp.

tsdest_cnts

int* tsdest_cnts

static

Definition at line 2285 of file bbsavestate.cpp.

use_gidcompress_

bool use_gidcompress_

static

Definition at line 287 of file bbsavestate.cpp.

use_spikecompress_

bool use_spikecompress_

static

Definition at line 286 of file bbsavestate.cpp.

usebin_

int usebin_

static

Definition at line 376 of file bbsavestate.cpp.